miRNA display CGI


Results 41 - 60 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 18419 0.77 0.235295
Target:  5'- --gCGUGcaggGCCuugGCCACGUGCGCCGCGg -3'
miRNA:   3'- gggGCACa---UGG---UGGUGUACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 60998 0.78 0.224321
Target:  5'- gCgCCGUcgagGCCGCCAUcgGCGCCGCGc -3'
miRNA:   3'- -GgGGCAca--UGGUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 27431 0.78 0.224321
Target:  5'- gCCCCGggGUGCCcgcCCGCGaGCGCCGCc -3'
miRNA:   3'- -GGGGCa-CAUGGu--GGUGUaCGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 30610 0.81 0.143955
Target:  5'- gCCCCGgg-GCCGCCGCGcaGCGCCGCa -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa-CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 84333 0.83 0.100645
Target:  5'- cCCCCGUaaaaccGUACCgGCCGCA-GCGCCGCGa -3'
miRNA:   3'- -GGGGCA------CAUGG-UGGUGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 43892 0.74 0.362719
Target:  5'- aCCCCaUGUG-CGCCGCGUGCgGCUGCa -3'
miRNA:   3'- -GGGGcACAUgGUGGUGUACG-CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 96177 0.74 0.362719
Target:  5'- gCCCCGccgcgGCCGCCGCcaugGCGCuCGCGg -3'
miRNA:   3'- -GGGGCaca--UGGUGGUGua--CGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 38781 0.72 0.446726
Target:  5'- gCCCCGccauUGCCACCGCcgGCcCCGCc -3'
miRNA:   3'- -GGGGCac--AUGGUGGUGuaCGcGGCGc -5'
6515 3' -58.4 NC_001847.1 + 62338 0.73 0.437839
Target:  5'- gCCCCGa-UGCCGCCACAaagaGCGCCGa- -3'
miRNA:   3'- -GGGGCacAUGGUGGUGUa---CGCGGCgc -5'
6515 3' -58.4 NC_001847.1 + 60686 0.73 0.437839
Target:  5'- cCCCCGcucGUACUgcagcGCCACggcgucGUGCGCCGCc -3'
miRNA:   3'- -GGGGCa--CAUGG-----UGGUG------UACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 132897 0.73 0.436074
Target:  5'- gCCCGgggACUACCACAcgcccgcgcccaGCGCCGCGg -3'
miRNA:   3'- gGGGCacaUGGUGGUGUa-----------CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 82878 0.73 0.420376
Target:  5'- gCCCGUGcggGCgCGCCGCAgccaaGCCGCGg -3'
miRNA:   3'- gGGGCACa--UG-GUGGUGUacg--CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 109910 0.73 0.420376
Target:  5'- aUCCCGUGUGCUugCA--UGCaaGCCGCa -3'
miRNA:   3'- -GGGGCACAUGGugGUguACG--CGGCGc -5'
6515 3' -58.4 NC_001847.1 + 31977 0.73 0.420376
Target:  5'- gCCCCGUGgacGCCGCC-CucgaGCCGCGa -3'
miRNA:   3'- -GGGGCACa--UGGUGGuGuacgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 60461 0.73 0.419514
Target:  5'- cCCCCGUcgggcgcGUccgccauggcGCCGCCGCuuuGUGCGCgCGCGg -3'
miRNA:   3'- -GGGGCA-------CA----------UGGUGGUG---UACGCG-GCGC- -5'
6515 3' -58.4 NC_001847.1 + 37211 0.73 0.40334
Target:  5'- gCCCG-GUGCCGCUugGcgGCGgCGCGg -3'
miRNA:   3'- gGGGCaCAUGGUGGugUa-CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 133658 0.73 0.394988
Target:  5'- aCCCCGagGcGCCGCCGC-UGCggcucuGCCGCGg -3'
miRNA:   3'- -GGGGCa-CaUGGUGGUGuACG------CGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 82455 0.74 0.386748
Target:  5'- aCCCCGcGcACgGCCGCGUGCGgCGUGc -3'
miRNA:   3'- -GGGGCaCaUGgUGGUGUACGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 93041 0.74 0.369818
Target:  5'- cCCCCGgcgccuggacgGUGCCggcACCGCGaggccgaUGCGCCGCa -3'
miRNA:   3'- -GGGGCa----------CAUGG---UGGUGU-------ACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 101069 0.74 0.362719
Target:  5'- gCCCCGgg-GCCGCCGCggGgGCCGgGu -3'
miRNA:   3'- -GGGGCacaUGGUGGUGuaCgCGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.