miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 5' -51 NC_001847.1 + 49923 0.69 0.951521
Target:  5'- gGCGCUGCGC--GUGCGCa-CGUUGGa -3'
miRNA:   3'- gUGUGAUGUGggCACGUGaaGCAACC- -5'
6515 5' -51 NC_001847.1 + 50528 0.67 0.984324
Target:  5'- uCGCGCUGgacCACCUG-GCGCUggCGUgcgGGu -3'
miRNA:   3'- -GUGUGAU---GUGGGCaCGUGAa-GCAa--CC- -5'
6515 5' -51 NC_001847.1 + 52580 0.67 0.98236
Target:  5'- aCGCGCUccguguaccGCGCgCgGUGCGCUUCGg--- -3'
miRNA:   3'- -GUGUGA---------UGUG-GgCACGUGAAGCaacc -5'
6515 5' -51 NC_001847.1 + 53984 0.69 0.947168
Target:  5'- cCACGuCUucCGCCCG-GCGCcgCGUUGGc -3'
miRNA:   3'- -GUGU-GAu-GUGGGCaCGUGaaGCAACC- -5'
6515 5' -51 NC_001847.1 + 57367 0.66 0.989229
Target:  5'- cCGCGCUGgGCCUcccGCACgUCGUagUGGa -3'
miRNA:   3'- -GUGUGAUgUGGGca-CGUGaAGCA--ACC- -5'
6515 5' -51 NC_001847.1 + 58856 0.67 0.984511
Target:  5'- gGCGCUGCGUCCGcGCGCcaggcaguguuagucUCGUUGGc -3'
miRNA:   3'- gUGUGAUGUGGGCaCGUGa--------------AGCAACC- -5'
6515 5' -51 NC_001847.1 + 59664 0.66 0.989229
Target:  5'- uCGCGCc-CGCCCGUGCGCUc---UGGc -3'
miRNA:   3'- -GUGUGauGUGGGCACGUGAagcaACC- -5'
6515 5' -51 NC_001847.1 + 60528 0.67 0.98236
Target:  5'- gGCGCUGC-CCagcUGCACgauggCGUUGGc -3'
miRNA:   3'- gUGUGAUGuGGgc-ACGUGaa---GCAACC- -5'
6515 5' -51 NC_001847.1 + 60820 0.66 0.989088
Target:  5'- aCACACUgauggcgcgagggGCGCCCGcgGCGCUgcgCGgcgccaGGg -3'
miRNA:   3'- -GUGUGA-------------UGUGGGCa-CGUGAa--GCaa----CC- -5'
6515 5' -51 NC_001847.1 + 66301 0.67 0.986118
Target:  5'- cCGCGCUcGCGCCCGaGCuCUUCGc-GGc -3'
miRNA:   3'- -GUGUGA-UGUGGGCaCGuGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 72021 0.71 0.896562
Target:  5'- uGCACaACcgACCCGUGCGCggCGgcGGc -3'
miRNA:   3'- gUGUGaUG--UGGGCACGUGaaGCaaCC- -5'
6515 5' -51 NC_001847.1 + 72162 0.66 0.989229
Target:  5'- uGCACUACgACCgCGUGUACc-CGcUGGu -3'
miRNA:   3'- gUGUGAUG-UGG-GCACGUGaaGCaACC- -5'
6515 5' -51 NC_001847.1 + 72624 0.72 0.867577
Target:  5'- gGCACgugcCGCCCGUgccGCACUUUGU-GGg -3'
miRNA:   3'- gUGUGau--GUGGGCA---CGUGAAGCAaCC- -5'
6515 5' -51 NC_001847.1 + 74015 0.7 0.932597
Target:  5'- cCACGCUGCGCCggcgCGUGcCGCUggCGgacgUGGc -3'
miRNA:   3'- -GUGUGAUGUGG----GCAC-GUGAa-GCa---ACC- -5'
6515 5' -51 NC_001847.1 + 82595 0.7 0.921029
Target:  5'- aGCGCUcgcggcgGCGCCUGUGCGCcgcgCGcUGGa -3'
miRNA:   3'- gUGUGA-------UGUGGGCACGUGaa--GCaACC- -5'
6515 5' -51 NC_001847.1 + 86259 0.67 0.984324
Target:  5'- gGCACUGCGCCCccGCGCgc---UGGg -3'
miRNA:   3'- gUGUGAUGUGGGcaCGUGaagcaACC- -5'
6515 5' -51 NC_001847.1 + 86504 0.67 0.980216
Target:  5'- gGCGCUGCA-CCGUcGCGCggCGgcUGGg -3'
miRNA:   3'- gUGUGAUGUgGGCA-CGUGaaGCa-ACC- -5'
6515 5' -51 NC_001847.1 + 90028 0.68 0.975354
Target:  5'- --aGCUGCACC--UGCGCUUCGagGGc -3'
miRNA:   3'- gugUGAUGUGGgcACGUGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 94683 0.66 0.991062
Target:  5'- gACGCuUAUGCCCGUGCcgcgcaaguacuggcGCUUCagcagcgaGUUGGc -3'
miRNA:   3'- gUGUG-AUGUGGGCACG---------------UGAAG--------CAACC- -5'
6515 5' -51 NC_001847.1 + 95142 0.67 0.986118
Target:  5'- gGCGCUGCGCuuGggggugccgGCAUggCGggGGg -3'
miRNA:   3'- gUGUGAUGUGggCa--------CGUGaaGCaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.