miRNA display CGI


Results 1 - 20 of 1482 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6522 5' -66.5 NC_001847.1 + 128415 0.66 0.461987
Target:  5'- aCGCCCGCuauguuGAGGgccagacuacagUGCGcucggcccuGCGCGcGCGCCc -3'
miRNA:   3'- -GCGGGCG------CUCC------------GCGC---------CGCGCuCGCGG- -5'
6522 5' -66.5 NC_001847.1 + 20504 0.66 0.461987
Target:  5'- gGCUCGCGcgucGuCGCGG-GCGGGgGCCc -3'
miRNA:   3'- gCGGGCGCuc--C-GCGCCgCGCUCgCGG- -5'
6522 5' -66.5 NC_001847.1 + 109330 0.66 0.461987
Target:  5'- aGCCUGCccGGCcgacGCGGCG-GAGCaGCUc -3'
miRNA:   3'- gCGGGCGcuCCG----CGCCGCgCUCG-CGG- -5'
6522 5' -66.5 NC_001847.1 + 33423 0.66 0.461987
Target:  5'- uGgCCGCcauaaacGGGCGCucGGCgucGCGGGCGUCg -3'
miRNA:   3'- gCgGGCGc------UCCGCG--CCG---CGCUCGCGG- -5'
6522 5' -66.5 NC_001847.1 + 75206 0.66 0.461987
Target:  5'- uGUCUGC-AGGCGCacGGUcaGCGAG-GCCa -3'
miRNA:   3'- gCGGGCGcUCCGCG--CCG--CGCUCgCGG- -5'
6522 5' -66.5 NC_001847.1 + 12306 0.66 0.461987
Target:  5'- aGCCaggGCGcGGGCcCGGUGgGcGCGCCc -3'
miRNA:   3'- gCGGg--CGC-UCCGcGCCGCgCuCGCGG- -5'
6522 5' -66.5 NC_001847.1 + 39884 0.66 0.461987
Target:  5'- gGCCCGgGuccAGGC-CGG-GCGuGCGCa -3'
miRNA:   3'- gCGGGCgC---UCCGcGCCgCGCuCGCGg -5'
6522 5' -66.5 NC_001847.1 + 62182 0.66 0.461987
Target:  5'- aGCCCacgcCGAGGUccacgcgcgcguGCGGCugcGUGAGCGUa -3'
miRNA:   3'- gCGGGc---GCUCCG------------CGCCG---CGCUCGCGg -5'
6522 5' -66.5 NC_001847.1 + 22115 0.66 0.461987
Target:  5'- uGCCgGCGucccagacGCGCGGCGgcgugcugGAGCGCa -3'
miRNA:   3'- gCGGgCGCuc------CGCGCCGCg-------CUCGCGg -5'
6522 5' -66.5 NC_001847.1 + 97820 0.66 0.461987
Target:  5'- aCGCCaGCGcugugcucGGCGC-GCGCGGGCuGCg -3'
miRNA:   3'- -GCGGgCGCu-------CCGCGcCGCGCUCG-CGg -5'
6522 5' -66.5 NC_001847.1 + 116562 0.66 0.461987
Target:  5'- uGCCUggGCGAcuuuGGCGCGGCacaCGGGCcgGUCa -3'
miRNA:   3'- gCGGG--CGCU----CCGCGCCGc--GCUCG--CGG- -5'
6522 5' -66.5 NC_001847.1 + 31610 0.66 0.461987
Target:  5'- aGCCCGagucccgguGGGCG-GGCGCGcuAGUGCa -3'
miRNA:   3'- gCGGGCgc-------UCCGCgCCGCGC--UCGCGg -5'
6522 5' -66.5 NC_001847.1 + 59229 0.66 0.461987
Target:  5'- uGCaCGCGucGGcCGuCGGCGauGGCGCCg -3'
miRNA:   3'- gCGgGCGCu-CC-GC-GCCGCgcUCGCGG- -5'
6522 5' -66.5 NC_001847.1 + 82464 0.66 0.461987
Target:  5'- aCGgCCGCGugcGGCGUGcCGUGGGacgaGCCc -3'
miRNA:   3'- -GCgGGCGCu--CCGCGCcGCGCUCg---CGG- -5'
6522 5' -66.5 NC_001847.1 + 6488 0.66 0.461987
Target:  5'- gGCCUGC-AGGUcguagguaGCGGCGuCGccGGCGCg -3'
miRNA:   3'- gCGGGCGcUCCG--------CGCCGC-GC--UCGCGg -5'
6522 5' -66.5 NC_001847.1 + 92725 0.66 0.461987
Target:  5'- aGCCuCGCGugcucGCGCaGCGCGuGGCagGCCa -3'
miRNA:   3'- gCGG-GCGCuc---CGCGcCGCGC-UCG--CGG- -5'
6522 5' -66.5 NC_001847.1 + 122576 0.66 0.461987
Target:  5'- gGCgCCGCGua-CGCGGCGCccguuGCGCa -3'
miRNA:   3'- gCG-GGCGCuccGCGCCGCGcu---CGCGg -5'
6522 5' -66.5 NC_001847.1 + 47471 0.66 0.461987
Target:  5'- aGCCCcaGCGcccGGGCcauGCGGCGC-AGC-CCa -3'
miRNA:   3'- gCGGG--CGC---UCCG---CGCCGCGcUCGcGG- -5'
6522 5' -66.5 NC_001847.1 + 947 0.66 0.461987
Target:  5'- gGCCCGCGc-GCGCcgcuccacgcuGCGcCGGGCGUCu -3'
miRNA:   3'- gCGGGCGCucCGCGc----------CGC-GCUCGCGG- -5'
6522 5' -66.5 NC_001847.1 + 6150 0.66 0.461987
Target:  5'- gGCUCgGUGGcGGUGaCGGCGCGcaGGUGCUc -3'
miRNA:   3'- gCGGG-CGCU-CCGC-GCCGCGC--UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.