miRNA display CGI


Results 41 - 60 of 345 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 3' -56.5 NC_001847.1 + 3082 0.66 0.85919
Target:  5'- cGcGuCCGGCGCGCagGCC-GCGGCCGGc -3'
miRNA:   3'- aC-CuGGCUGCGUG--CGGaUGUUGGCUu -5'
6527 3' -56.5 NC_001847.1 + 28348 0.66 0.85919
Target:  5'- gGGGCCGcGCGCccgggcccccgGCGCCcucGCcGCCGGAg -3'
miRNA:   3'- aCCUGGC-UGCG-----------UGCGGa--UGuUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 58018 0.66 0.85919
Target:  5'- cGG-UCGcGCGCGCGCCUugaaGCAGCCc-- -3'
miRNA:   3'- aCCuGGC-UGCGUGCGGA----UGUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 30687 0.66 0.85919
Target:  5'- cGGGCaGGCGCACGuguaCCUGCGcGCCGc- -3'
miRNA:   3'- aCCUGgCUGCGUGC----GGAUGU-UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 29520 0.66 0.85919
Target:  5'- aGGuGCCGGCGCG-GCUgGCGGCCGc- -3'
miRNA:   3'- aCC-UGGCUGCGUgCGGaUGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 19263 0.66 0.85919
Target:  5'- cGGACCGGuuCugGCCgGCGGCgCGAc -3'
miRNA:   3'- aCCUGGCUgcGugCGGaUGUUG-GCUu -5'
6527 3' -56.5 NC_001847.1 + 131429 0.66 0.85919
Target:  5'- cGuGGCCGGCGCGCGCg-AUuGCCGc- -3'
miRNA:   3'- aC-CUGGCUGCGUGCGgaUGuUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 133500 0.66 0.85919
Target:  5'- cGGGCaGGCGCACGuguaCCUGCGcGCCGc- -3'
miRNA:   3'- aCCUGgCUGCGUGC----GGAUGU-UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 2799 0.66 0.85919
Target:  5'- aGGGCCGcgaGCGCgGCCgcCAGCCGc- -3'
miRNA:   3'- aCCUGGCug-CGUG-CGGauGUUGGCuu -5'
6527 3' -56.5 NC_001847.1 + 21309 0.66 0.85919
Target:  5'- gGGACCGGCGCgccACGCggGguGCCa-- -3'
miRNA:   3'- aCCUGGCUGCG---UGCGgaUguUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 124906 0.66 0.85919
Target:  5'- cGGGcCCGGCagGCGCGCCgggggcgACAGCgGGc -3'
miRNA:   3'- aCCU-GGCUG--CGUGCGGa------UGUUGgCUu -5'
6527 3' -56.5 NC_001847.1 + 131161 0.66 0.85919
Target:  5'- gGGGCCGcGCGCccgggcccccgGCGCCcucGCcGCCGGAg -3'
miRNA:   3'- aCCUGGC-UGCG-----------UGCGGa--UGuUGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 124549 0.66 0.856853
Target:  5'- cGGGCCGGCGC-CGgCCcGCGcgcgcgggggggccGCCGGc -3'
miRNA:   3'- aCCUGGCUGCGuGC-GGaUGU--------------UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 21736 0.66 0.856853
Target:  5'- cGGGCCGGCGC-CGgCCcGCGcgcgcgggggggccGCCGGc -3'
miRNA:   3'- aCCUGGCUGCGuGC-GGaUGU--------------UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 80547 0.66 0.851329
Target:  5'- cGGcGCgGGCGCGCGCCgcCAgcGCCGc- -3'
miRNA:   3'- aCC-UGgCUGCGUGCGGauGU--UGGCuu -5'
6527 3' -56.5 NC_001847.1 + 115007 0.66 0.851329
Target:  5'- cGGGCCGAgcuucguucgcCGCGCGCCaugagggcgGCGAguCCGGGg -3'
miRNA:   3'- aCCUGGCU-----------GCGUGCGGa--------UGUU--GGCUU- -5'
6527 3' -56.5 NC_001847.1 + 29482 0.66 0.851329
Target:  5'- cUGGgcGCUGGCGCGCGCgCUGuuCAGCCc-- -3'
miRNA:   3'- -ACC--UGGCUGCGUGCG-GAU--GUUGGcuu -5'
6527 3' -56.5 NC_001847.1 + 114958 0.66 0.851329
Target:  5'- gUGGuauucgcauACCGGCGCGCccguuGCCUGagcGCCGAGu -3'
miRNA:   3'- -ACC---------UGGCUGCGUG-----CGGAUgu-UGGCUU- -5'
6527 3' -56.5 NC_001847.1 + 31841 0.66 0.851329
Target:  5'- aGGACCcuacguuCGCGCGCCcggGCucGCCGGc -3'
miRNA:   3'- aCCUGGcu-----GCGUGCGGa--UGu-UGGCUu -5'
6527 3' -56.5 NC_001847.1 + 36767 0.66 0.851329
Target:  5'- cUGGAgaUCGA-GCGCGCCcGCGACgCGGAc -3'
miRNA:   3'- -ACCU--GGCUgCGUGCGGaUGUUG-GCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.