miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
653 5' -56.7 AC_000017.1 + 26765 1.11 0.000225
Target:  5'- cGGCAGCAACAGCAGCGGCCACACAGAa -3'
miRNA:   3'- -CCGUCGUUGUCGUCGCCGGUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 15074 0.8 0.05254
Target:  5'- cGGCGGCAACAaCAGUGGCagcgGCGCGGAa -3'
miRNA:   3'- -CCGUCGUUGUcGUCGCCGg---UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 9752 0.78 0.079885
Target:  5'- gGGCGGCAGCgGGCGGCGGUcgggguuguuuCugGCGGAg -3'
miRNA:   3'- -CCGUCGUUG-UCGUCGCCG-----------GugUGUCU- -5'
653 5' -56.7 AC_000017.1 + 2175 0.77 0.082291
Target:  5'- aGCAGCAggaggaagccagGCGGCGGCGGCgGCaggaGCAGAg -3'
miRNA:   3'- cCGUCGU------------UGUCGUCGCCGgUG----UGUCU- -5'
653 5' -56.7 AC_000017.1 + 11090 0.77 0.089931
Target:  5'- cGGCaagAGCAAgAGCAGCGGCagaCAUGCAGGg -3'
miRNA:   3'- -CCG---UCGUUgUCGUCGCCG---GUGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 3863 0.76 0.107272
Target:  5'- uGGCuGCAGCGGCugaAGCGGCgGCGgAGGc -3'
miRNA:   3'- -CCGuCGUUGUCG---UCGCCGgUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 14211 0.75 0.127716
Target:  5'- cGCGGCGcCAGUGGCGGCgGCGCuGGg -3'
miRNA:   3'- cCGUCGUuGUCGUCGCCGgUGUGuCU- -5'
653 5' -56.7 AC_000017.1 + 18165 0.74 0.147446
Target:  5'- uGGCAGCAaggccuggaACAGCAGCacaGGCCaaauGCugAGGg -3'
miRNA:   3'- -CCGUCGU---------UGUCGUCG---CCGG----UGugUCU- -5'
653 5' -56.7 AC_000017.1 + 18655 0.73 0.160128
Target:  5'- gGGCGGguuacaaCAACGGCGGaCGGCCcuggcaGCACAGGu -3'
miRNA:   3'- -CCGUC-------GUUGUCGUC-GCCGG------UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 17276 0.73 0.182776
Target:  5'- cGGCGGUGGCAGaugccgcggugcaGGCGGCCGCuGCGGc -3'
miRNA:   3'- -CCGUCGUUGUCg------------UCGCCGGUG-UGUCu -5'
653 5' -56.7 AC_000017.1 + 13985 0.73 0.184829
Target:  5'- cGGCAGaCGACAGCAGCGuCCuggauUugGGAg -3'
miRNA:   3'- -CCGUC-GUUGUCGUCGCcGGu----GugUCU- -5'
653 5' -56.7 AC_000017.1 + 27977 0.73 0.184829
Target:  5'- uGUGGCGGCGGCAGUGGUCaagguguguuagGCGCAGu -3'
miRNA:   3'- cCGUCGUUGUCGUCGCCGG------------UGUGUCu -5'
653 5' -56.7 AC_000017.1 + 16407 0.73 0.184829
Target:  5'- cGCGGCuGCuGCGGCGGCCGCuCGu- -3'
miRNA:   3'- cCGUCGuUGuCGUCGCCGGUGuGUcu -5'
653 5' -56.7 AC_000017.1 + 12089 0.72 0.195402
Target:  5'- uGGCuGGCAcgGGCAGCGGCgAUAgAGAg -3'
miRNA:   3'- -CCG-UCGUugUCGUCGCCGgUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 33339 0.72 0.200885
Target:  5'- cGGCGGCGGCAGCAguuuauucGCGcGCUGCuGCAGc -3'
miRNA:   3'- -CCGUCGUUGUCGU--------CGC-CGGUG-UGUCu -5'
653 5' -56.7 AC_000017.1 + 10761 0.71 0.21814
Target:  5'- gGGCGGUAaccgcauggaucACGGCGGaCGGCCggAUACGGGg -3'
miRNA:   3'- -CCGUCGU------------UGUCGUC-GCCGG--UGUGUCU- -5'
653 5' -56.7 AC_000017.1 + 16353 0.71 0.22785
Target:  5'- cGGCcgccGCAGCAGCcGCGGCCAUuagugcuaugacuCAGGg -3'
miRNA:   3'- -CCGu---CGUUGUCGuCGCCGGUGu------------GUCU- -5'
653 5' -56.7 AC_000017.1 + 23949 0.71 0.236645
Target:  5'- gGGgGGCGGCGGCGaCGGCgACGgGGAc -3'
miRNA:   3'- -CCgUCGUUGUCGUcGCCGgUGUgUCU- -5'
653 5' -56.7 AC_000017.1 + 17590 0.71 0.236646
Target:  5'- uGGCgacGGCGACGGCGGCGGCgGguucCAguGGu -3'
miRNA:   3'- -CCG---UCGUUGUCGUCGCCGgU----GUguCU- -5'
653 5' -56.7 AC_000017.1 + 18862 0.71 0.236646
Target:  5'- cGCGGCGacucaGCAGCuccucuGGCGGCgACAUGGAc -3'
miRNA:   3'- cCGUCGU-----UGUCG------UCGCCGgUGUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.