miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 3' -53.9 NC_001847.1 + 133666 0.66 0.909772
Target:  5'- gCGCCGCCgcUGCGGcucUGCCgcgGCggCAACGUg -3'
miRNA:   3'- -GUGGUGG--ACGUC---AUGGa--CGa-GUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 131571 0.7 0.739405
Target:  5'- gGCCcggACCUGCAGcuggcgcGCCUGCUgCAGCGg -3'
miRNA:   3'- gUGG---UGGACGUCa------UGGACGA-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 131452 0.66 0.915953
Target:  5'- gCGCCuACCUGUGGUGCgCgcagGCUCGcgGCGg -3'
miRNA:   3'- -GUGG-UGGACGUCAUG-Ga---CGAGU--UGUa -5'
6535 3' -53.9 NC_001847.1 + 131081 0.69 0.807627
Target:  5'- aACCGCCU-CGGUACCgUGUUCAcCGUg -3'
miRNA:   3'- gUGGUGGAcGUCAUGG-ACGAGUuGUA- -5'
6535 3' -53.9 NC_001847.1 + 131027 0.73 0.570249
Target:  5'- gACCGCCUGU-GUGCCUcGCUCAuccaGCAg -3'
miRNA:   3'- gUGGUGGACGuCAUGGA-CGAGU----UGUa -5'
6535 3' -53.9 NC_001847.1 + 127300 0.68 0.825706
Target:  5'- gCGCCACCgGCGGUGCCggagacacgGCgacCGGCGc -3'
miRNA:   3'- -GUGGUGGaCGUCAUGGa--------CGa--GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 121134 0.68 0.834461
Target:  5'- cCGCCGCCUGC--UGCCgUGCUCucGGCGc -3'
miRNA:   3'- -GUGGUGGACGucAUGG-ACGAG--UUGUa -5'
6535 3' -53.9 NC_001847.1 + 117791 0.66 0.927534
Target:  5'- aUACC-CCUGCGGgcuggACCgaggGCUCggUGUg -3'
miRNA:   3'- -GUGGuGGACGUCa----UGGa---CGAGuuGUA- -5'
6535 3' -53.9 NC_001847.1 + 114686 0.67 0.89664
Target:  5'- aGCCGCC-GCG--GCCUGCUgGACGc -3'
miRNA:   3'- gUGGUGGaCGUcaUGGACGAgUUGUa -5'
6535 3' -53.9 NC_001847.1 + 113296 0.7 0.729167
Target:  5'- gCACCACCUGCuGcACCgaGCgCAGCAUu -3'
miRNA:   3'- -GUGGUGGACGuCaUGGa-CGaGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 109968 0.71 0.697944
Target:  5'- gGCCAgCUGC--UACCUGCUCAAUc- -3'
miRNA:   3'- gUGGUgGACGucAUGGACGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 106095 0.72 0.644835
Target:  5'- cCACCGCCUGCAGcACguCUGC-CGGCGc -3'
miRNA:   3'- -GUGGUGGACGUCaUG--GACGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 99603 0.66 0.927534
Target:  5'- gCGCCGCCUcgGCAGccacgACCUcgccgaggaugcGCUCGGCGc -3'
miRNA:   3'- -GUGGUGGA--CGUCa----UGGA------------CGAGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 97776 0.68 0.85136
Target:  5'- gGCCGCCaGCAGagagaggACCgGCUCGACc- -3'
miRNA:   3'- gUGGUGGaCGUCa------UGGaCGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 90029 0.69 0.816758
Target:  5'- gCugCACCUGCGcuucgaggGCCUGUUCAcGCAUg -3'
miRNA:   3'- -GugGUGGACGUca------UGGACGAGU-UGUA- -5'
6535 3' -53.9 NC_001847.1 + 88631 0.71 0.655517
Target:  5'- gCGCgCACgUGCgcgAGaGCCUGCUCAGCGUg -3'
miRNA:   3'- -GUG-GUGgACG---UCaUGGACGAGUUGUA- -5'
6535 3' -53.9 NC_001847.1 + 85315 0.68 0.843015
Target:  5'- gGCCGCCUGCAGcguccagGCC-GC-CAGCGc -3'
miRNA:   3'- gUGGUGGACGUCa------UGGaCGaGUUGUa -5'
6535 3' -53.9 NC_001847.1 + 84089 0.67 0.89664
Target:  5'- --aCGCCU-CGGUgGCCUGCUCGACc- -3'
miRNA:   3'- gugGUGGAcGUCA-UGGACGAGUUGua -5'
6535 3' -53.9 NC_001847.1 + 82962 0.71 0.675749
Target:  5'- gGCCGCCUGCgaucuguGGUGgCUGCUcCGGCGg -3'
miRNA:   3'- gUGGUGGACG-------UCAUgGACGA-GUUGUa -5'
6535 3' -53.9 NC_001847.1 + 80347 0.69 0.807627
Target:  5'- gCGCCAgCUcGCAGUACCcGUgCAGCGUg -3'
miRNA:   3'- -GUGGUgGA-CGUCAUGGaCGaGUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.