miRNA display CGI


Results 21 - 40 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 88547 0.66 0.531697
Target:  5'- uGUGCGCgUgGCgugaccGcGCUcGCGCGCGGcGCGa -3'
miRNA:   3'- -CAUGCGgA-CGa-----C-CGA-CGCGCGCC-CGC- -5'
6535 5' -63.2 NC_001847.1 + 61634 0.66 0.51265
Target:  5'- aUGCGCCcGCUGGaCUGCaGCGCcgccaccGCGg -3'
miRNA:   3'- cAUGCGGaCGACC-GACG-CGCGcc-----CGC- -5'
6535 5' -63.2 NC_001847.1 + 82607 0.66 0.550993
Target:  5'- -gGCGCCUGUgcGCcGCGCGCuGGaGCu -3'
miRNA:   3'- caUGCGGACGacCGaCGCGCG-CC-CGc -5'
6535 5' -63.2 NC_001847.1 + 19342 0.66 0.541316
Target:  5'- -aGCGCCgcgGCcgGGUcuUGCGCGCGcccgacGGUGg -3'
miRNA:   3'- caUGCGGa--CGa-CCG--ACGCGCGC------CCGC- -5'
6535 5' -63.2 NC_001847.1 + 48184 0.66 0.503232
Target:  5'- -gGCGuCCUGCUGuGC--CGCGCcGGCGg -3'
miRNA:   3'- caUGC-GGACGAC-CGacGCGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 13945 0.66 0.51265
Target:  5'- aUGCGCgaGCUgcGGCUGCGgccCGUGGGa- -3'
miRNA:   3'- cAUGCGgaCGA--CCGACGC---GCGCCCgc -5'
6535 5' -63.2 NC_001847.1 + 6334 0.66 0.503232
Target:  5'- cGUACGCgggUGCcccGGCggcaaccGCGcCGCGGGCGu -3'
miRNA:   3'- -CAUGCGg--ACGa--CCGa------CGC-GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 43554 0.66 0.550993
Target:  5'- -gGCGCC-GC-GGuUUGCGCgcuucgccGCGGGCGa -3'
miRNA:   3'- caUGCGGaCGaCC-GACGCG--------CGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 58807 0.66 0.531697
Target:  5'- -aGCGCCUGCgccggcgccugGGCcgGUGCGaGGGuCGg -3'
miRNA:   3'- caUGCGGACGa----------CCGa-CGCGCgCCC-GC- -5'
6535 5' -63.2 NC_001847.1 + 43000 0.66 0.531697
Target:  5'- -aACGCC-GCcggGGggGCGCGCcGGGCc -3'
miRNA:   3'- caUGCGGaCGa--CCgaCGCGCG-CCCGc -5'
6535 5' -63.2 NC_001847.1 + 65946 0.66 0.541316
Target:  5'- -gACGCCcaggcGCUGGagcuCGCGCGGGaCGu -3'
miRNA:   3'- caUGCGGa----CGACCgac-GCGCGCCC-GC- -5'
6535 5' -63.2 NC_001847.1 + 59506 0.66 0.547116
Target:  5'- gGUGCGCCgagGCcgcaccggcuuggUGcGCUGCGCucauggcaggcgguGgGGGCGg -3'
miRNA:   3'- -CAUGCGGa--CG-------------AC-CGACGCG--------------CgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 83629 0.66 0.541316
Target:  5'- --cCGCCUGCcGGCgccGCaccgGCGCGGcGCu -3'
miRNA:   3'- cauGCGGACGaCCGa--CG----CGCGCC-CGc -5'
6535 5' -63.2 NC_001847.1 + 34926 0.66 0.550993
Target:  5'- uGUcCGCCgccGCUGGCgcaGCuGCGCGGcaucGCGu -3'
miRNA:   3'- -CAuGCGGa--CGACCGa--CG-CGCGCC----CGC- -5'
6535 5' -63.2 NC_001847.1 + 87686 0.66 0.550993
Target:  5'- -gGCGCUgggGCU-GCUGCgGCGCcGcGGCGg -3'
miRNA:   3'- caUGCGGa--CGAcCGACG-CGCG-C-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 56260 0.66 0.531697
Target:  5'- uGU-CGCCcuuuuacgGGCUGCGCGaGGGCGc -3'
miRNA:   3'- -CAuGCGGacga----CCGACGCGCgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 63843 0.66 0.503232
Target:  5'- cGUGCGCUUuc---CUGCGCGCGGGgGg -3'
miRNA:   3'- -CAUGCGGAcgaccGACGCGCGCCCgC- -5'
6535 5' -63.2 NC_001847.1 + 102773 0.66 0.550993
Target:  5'- -gACGCCcGCgacgccGGCgccccccGCGCGgGGGCu -3'
miRNA:   3'- caUGCGGaCGa-----CCGa------CGCGCgCCCGc -5'
6535 5' -63.2 NC_001847.1 + 45138 0.66 0.541316
Target:  5'- -gACGCCgaggUGCcGGCgGUgaGCGCGGGgGa -3'
miRNA:   3'- caUGCGG----ACGaCCGaCG--CGCGCCCgC- -5'
6535 5' -63.2 NC_001847.1 + 77563 0.66 0.503232
Target:  5'- cGUGCGCUUuccGC-GGC--CGCGCGGGCc -3'
miRNA:   3'- -CAUGCGGA---CGaCCGacGCGCGCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.