miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 37979 0.65 0.557798
Target:  5'- -cGCGCCgcccugccucauuaUGCUGGauacgcauCUGCagcucGCGCGGGUGc -3'
miRNA:   3'- caUGCGG--------------ACGACC--------GACG-----CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 88845 0.66 0.50699
Target:  5'- -gGCGCUacgGCUGGCcGUagaggaagacgcgguGCGCGcGGCGg -3'
miRNA:   3'- caUGCGGa--CGACCGaCG---------------CGCGC-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 389 0.66 0.554878
Target:  5'- -cGCGCCggaccgcGCUccgaccgagaccgagGGCccgggGCGgGCGGGCGg -3'
miRNA:   3'- caUGCGGa------CGA---------------CCGa----CGCgCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 70728 0.66 0.51265
Target:  5'- -cGCGCCgGCagUGGC-GCGCGUaaaGGCGg -3'
miRNA:   3'- caUGCGGaCG--ACCGaCGCGCGc--CCGC- -5'
6535 5' -63.2 NC_001847.1 + 131360 0.66 0.503232
Target:  5'- cGUGCGCUU-C-GGCg--GCGCGGGCGa -3'
miRNA:   3'- -CAUGCGGAcGaCCGacgCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 77563 0.66 0.503232
Target:  5'- cGUGCGCUUuccGC-GGC--CGCGCGGGCc -3'
miRNA:   3'- -CAUGCGGA---CGaCCGacGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 105964 0.66 0.503232
Target:  5'- -gGCGCCgGC-GGC-GCG-GCGGGCc -3'
miRNA:   3'- caUGCGGaCGaCCGaCGCgCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 43103 0.66 0.528823
Target:  5'- -gGCGCCcGgaGGCgccgGCggugcccgcagacgGCGCGGGCc -3'
miRNA:   3'- caUGCGGaCgaCCGa---CG--------------CGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 90543 0.66 0.503232
Target:  5'- -gGCGCC--CUGGCggcccucgccGCGCGCgaGGGCGa -3'
miRNA:   3'- caUGCGGacGACCGa---------CGCGCG--CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 59895 0.66 0.51265
Target:  5'- cGUugGCgaGgagGGCggcgcGCGCGCGcGGCGa -3'
miRNA:   3'- -CAugCGgaCga-CCGa----CGCGCGC-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 13945 0.66 0.51265
Target:  5'- aUGCGCgaGCUgcGGCUGCGgccCGUGGGa- -3'
miRNA:   3'- cAUGCGgaCGA--CCGACGC---GCGCCCgc -5'
6535 5' -63.2 NC_001847.1 + 6334 0.66 0.503232
Target:  5'- cGUACGCgggUGCcccGGCggcaaccGCGcCGCGGGCGu -3'
miRNA:   3'- -CAUGCGg--ACGa--CCGa------CGC-GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 63843 0.66 0.503232
Target:  5'- cGUGCGCUUuc---CUGCGCGCGGGgGg -3'
miRNA:   3'- -CAUGCGGAcgaccGACGCGCGCCCgC- -5'
6535 5' -63.2 NC_001847.1 + 58807 0.66 0.531697
Target:  5'- -aGCGCCUGCgccggcgccugGGCcgGUGCGaGGGuCGg -3'
miRNA:   3'- caUGCGGACGa----------CCGa-CGCGCgCCC-GC- -5'
6535 5' -63.2 NC_001847.1 + 111263 0.66 0.51265
Target:  5'- -gGCGCCgggucGgaGGCgGCGC-CGGGCc -3'
miRNA:   3'- caUGCGGa----CgaCCGaCGCGcGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 31440 0.66 0.503232
Target:  5'- -gACGUC-GCUGGCgcugGUGauCGUGGGCGc -3'
miRNA:   3'- caUGCGGaCGACCGa---CGC--GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 101494 0.66 0.503232
Target:  5'- -aGCGaCCgagGCgccGGCUGCacCGCGGGUGu -3'
miRNA:   3'- caUGC-GGa--CGa--CCGACGc-GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 33566 0.66 0.52214
Target:  5'- -gACGCCgcggagGC-GGCcGUGCGCGGuGCc -3'
miRNA:   3'- caUGCGGa-----CGaCCGaCGCGCGCC-CGc -5'
6535 5' -63.2 NC_001847.1 + 54593 0.66 0.531697
Target:  5'- -gGCGgC-GCUGGCgGCGCGCGcccGCGc -3'
miRNA:   3'- caUGCgGaCGACCGaCGCGCGCc--CGC- -5'
6535 5' -63.2 NC_001847.1 + 48184 0.66 0.503232
Target:  5'- -gGCGuCCUGCUGuGC--CGCGCcGGCGg -3'
miRNA:   3'- caUGC-GGACGAC-CGacGCGCGcCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.