miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 389 0.66 0.554878
Target:  5'- -cGCGCCggaccgcGCUccgaccgagaccgagGGCccgggGCGgGCGGGCGg -3'
miRNA:   3'- caUGCGGa------CGA---------------CCGa----CGCgCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 955 0.71 0.286508
Target:  5'- -cGCGCC-GCUccacGCUGCGC-CGGGCGu -3'
miRNA:   3'- caUGCGGaCGAc---CGACGCGcGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 1089 0.67 0.47545
Target:  5'- -cACGCCggGCgccGCgGC-CGCGGGCGg -3'
miRNA:   3'- caUGCGGa-CGac-CGaCGcGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 1207 0.67 0.49389
Target:  5'- cGUGCGCUcGgUGuuCUuuuaGCGCGCGGGCGc -3'
miRNA:   3'- -CAUGCGGaCgACc-GA----CGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 1593 0.69 0.357367
Target:  5'- -cGCGCC-GCUcgGGCcaGCGCGCGGcGCa -3'
miRNA:   3'- caUGCGGaCGA--CCGa-CGCGCGCC-CGc -5'
6535 5' -63.2 NC_001847.1 + 1655 0.68 0.413825
Target:  5'- cGUGCGCCUGCccgacggccgGGCcGuCGCGCGGcCa -3'
miRNA:   3'- -CAUGCGGACGa---------CCGaC-GCGCGCCcGc -5'
6535 5' -63.2 NC_001847.1 + 2176 0.76 0.123007
Target:  5'- -aGCGCCcGCgccgccugGGCgGCGUGCGGGCGc -3'
miRNA:   3'- caUGCGGaCGa-------CCGaCGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 2229 0.76 0.123007
Target:  5'- -aGCGCC-GCgGcGCUGgGCGCGGGCGu -3'
miRNA:   3'- caUGCGGaCGaC-CGACgCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 2547 0.68 0.430936
Target:  5'- --cCGCUgcucuccgGCgGGCUGUcuucgGCGCGGGCGc -3'
miRNA:   3'- cauGCGGa-------CGaCCGACG-----CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 2849 0.68 0.422328
Target:  5'- gGUcCGCCaUGCc-GCUGCGacuCGCGGGCGu -3'
miRNA:   3'- -CAuGCGG-ACGacCGACGC---GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 2859 0.7 0.313446
Target:  5'- -cGCGCCaGCgcccaGGCcGaCGCGCGGGCc -3'
miRNA:   3'- caUGCGGaCGa----CCGaC-GCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 3151 0.66 0.503232
Target:  5'- -gGCGCCgGC-GGC-GCG-GCGGGCc -3'
miRNA:   3'- caUGCGGaCGaCCGaCGCgCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 3295 0.69 0.372935
Target:  5'- -gGCGCgCaGCUcGGCgagcGCgGCGCGGGCGc -3'
miRNA:   3'- caUGCG-GaCGA-CCGa---CG-CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 3868 0.68 0.422328
Target:  5'- -gGCGCCgg--GGCUGCGCagcucccaGCGGaGCGa -3'
miRNA:   3'- caUGCGGacgaCCGACGCG--------CGCC-CGC- -5'
6535 5' -63.2 NC_001847.1 + 3896 0.69 0.372935
Target:  5'- -gGCGCC-GC-GGCguaGCcaGCGCGGGCGc -3'
miRNA:   3'- caUGCGGaCGaCCGa--CG--CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 3930 0.7 0.320473
Target:  5'- -cGCGCCcgcGCUGGCgccGCG-GCGGGgGg -3'
miRNA:   3'- caUGCGGa--CGACCGa--CGCgCGCCCgC- -5'
6535 5' -63.2 NC_001847.1 + 3980 0.66 0.52214
Target:  5'- -gGCGCCggg-GGCcggGCGCGCGGccccGCGg -3'
miRNA:   3'- caUGCGGacgaCCGa--CGCGCGCC----CGC- -5'
6535 5' -63.2 NC_001847.1 + 4191 0.69 0.342259
Target:  5'- -cGCGCCcGUgGGCcGCGCGCaGGCa -3'
miRNA:   3'- caUGCGGaCGaCCGaCGCGCGcCCGc -5'
6535 5' -63.2 NC_001847.1 + 5217 0.69 0.380891
Target:  5'- --uCGCCgcgGCggccGGCgggGCGCGCGcGGCa -3'
miRNA:   3'- cauGCGGa--CGa---CCGa--CGCGCGC-CCGc -5'
6535 5' -63.2 NC_001847.1 + 5717 0.68 0.405427
Target:  5'- gGUGCGCCUGggagGGCuuaccUGCcCGCGgGGCGg -3'
miRNA:   3'- -CAUGCGGACga--CCG-----ACGcGCGC-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.