miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 13091 0.74 0.185717
Target:  5'- aGUGCGCaaCUGCcauuuuuugucgcGGCcgggGCGCGCGGGCGg -3'
miRNA:   3'- -CAUGCG--GACGa------------CCGa---CGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 54372 0.75 0.146622
Target:  5'- cUGCGCgaGCU-GCUGCG-GCGGGCGg -3'
miRNA:   3'- cAUGCGgaCGAcCGACGCgCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 69340 0.75 0.148828
Target:  5'- -gGCG-CUGCUGGCggcgcuggugcugGCGCGCGcGGCGg -3'
miRNA:   3'- caUGCgGACGACCGa------------CGCGCGC-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 40163 0.75 0.150315
Target:  5'- cUGCGCCaaagccGCgggGGCUGCGCGC-GGCGg -3'
miRNA:   3'- cAUGCGGa-----CGa--CCGACGCGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 131590 0.75 0.157957
Target:  5'- -cGCGCCUGCUGcaGCgGCGCGUgcaGGGCu -3'
miRNA:   3'- caUGCGGACGAC--CGaCGCGCG---CCCGc -5'
6535 5' -63.2 NC_001847.1 + 84638 0.75 0.157957
Target:  5'- -cAUGCCgcgGCU-GCUGCGCGCucGGGCGa -3'
miRNA:   3'- caUGCGGa--CGAcCGACGCGCG--CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 66326 0.74 0.165949
Target:  5'- -gGCGcCCUGC-GGCgggugGgGCGCGGGCGc -3'
miRNA:   3'- caUGC-GGACGaCCGa----CgCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 78417 0.74 0.171756
Target:  5'- -gGCGCgCUGCUGGC-GCGCGCgcugacggaggagcuGGGCu -3'
miRNA:   3'- caUGCG-GACGACCGaCGCGCG---------------CCCGc -5'
6535 5' -63.2 NC_001847.1 + 61264 0.74 0.174301
Target:  5'- -cGCGUCcGC-GGC-GCGCGCGGGCGc -3'
miRNA:   3'- caUGCGGaCGaCCGaCGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 97825 0.76 0.129368
Target:  5'- -aGCGCUgUGCUcGGC-GCGCGCGGGCu -3'
miRNA:   3'- caUGCGG-ACGA-CCGaCGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 2176 0.76 0.123007
Target:  5'- -aGCGCCcGCgccgccugGGCgGCGUGCGGGCGc -3'
miRNA:   3'- caUGCGGaCGa-------CCGaCGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 105042 0.76 0.123007
Target:  5'- -aGCGCC-GCgGcGCUGgGCGCGGGCGu -3'
miRNA:   3'- caUGCGGaCGaC-CGACgCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 73182 0.8 0.062994
Target:  5'- -cGCGCCgGCgGGCacgGCGCGCGGGCa -3'
miRNA:   3'- caUGCGGaCGaCCGa--CGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 53356 0.79 0.077573
Target:  5'- -gACGCgCUGCUGGCgGC-CGCGGGCa -3'
miRNA:   3'- caUGCG-GACGACCGaCGcGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 40112 0.79 0.083834
Target:  5'- gGUugGUaggUGC-GGCUGCGCGUGGGCGa -3'
miRNA:   3'- -CAugCGg--ACGaCCGACGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 43221 0.78 0.088272
Target:  5'- -gGCGCCguUGCccggUGGCgguggggGCGCGCGGGCGg -3'
miRNA:   3'- caUGCGG--ACG----ACCGa------CGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 78663 0.78 0.090574
Target:  5'- -cGCGCCUGCgucgccGGCgUGCGCacGCGGGCGc -3'
miRNA:   3'- caUGCGGACGa-----CCG-ACGCG--CGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 133546 0.77 0.102964
Target:  5'- aGUGCGCCgcgcGCUGGCccgagcgGCGCGCuGGCGc -3'
miRNA:   3'- -CAUGCGGa---CGACCGa------CGCGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 54807 0.77 0.108354
Target:  5'- -cGCGCCgcGCUGGCga-GCGCGGGCa -3'
miRNA:   3'- caUGCGGa-CGACCGacgCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 99666 0.77 0.114008
Target:  5'- -cGCGCCggaccccaaagGCUGGCUuugcgGCGCGCGGcGCGg -3'
miRNA:   3'- caUGCGGa----------CGACCGA-----CGCGCGCC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.