miRNA display CGI


Results 21 - 40 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 117481 0.75 0.150315
Target:  5'- -cGCGCCUGgagcuCUGGUUucaGCGCGUGGGCa -3'
miRNA:   3'- caUGCGGAC-----GACCGA---CGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 40163 0.75 0.150315
Target:  5'- cUGCGCCaaagccGCgggGGCUGCGCGC-GGCGg -3'
miRNA:   3'- cAUGCGGa-----CGa--CCGACGCGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 131590 0.75 0.157957
Target:  5'- -cGCGCCUGCUGcaGCgGCGCGUgcaGGGCu -3'
miRNA:   3'- caUGCGGACGAC--CGaCGCGCG---CCCGc -5'
6535 5' -63.2 NC_001847.1 + 84638 0.75 0.157957
Target:  5'- -cAUGCCgcgGCU-GCUGCGCGCucGGGCGa -3'
miRNA:   3'- caUGCGGa--CGAcCGACGCGCG--CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 28777 0.75 0.157957
Target:  5'- -cGCGCCUGCUGcaGCgGCGCGUgcaGGGCu -3'
miRNA:   3'- caUGCGGACGAC--CGaCGCGCG---CCCGc -5'
6535 5' -63.2 NC_001847.1 + 66326 0.74 0.165949
Target:  5'- -gGCGcCCUGC-GGCgggugGgGCGCGGGCGc -3'
miRNA:   3'- caUGC-GGACGaCCGa----CgCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 115668 0.74 0.165949
Target:  5'- -cGCGuCCgUGCgggugagcGGCUGCGCGgGGGCGa -3'
miRNA:   3'- caUGC-GG-ACGa-------CCGACGCGCgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 52254 0.74 0.170079
Target:  5'- -cGCGCCgcgGCuUGGCUGCgGCGCgcccgcacGGGCGa -3'
miRNA:   3'- caUGCGGa--CG-ACCGACG-CGCG--------CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 78417 0.74 0.171756
Target:  5'- -gGCGCgCUGCUGGC-GCGCGCgcugacggaggagcuGGGCu -3'
miRNA:   3'- caUGCG-GACGACCGaCGCGCG---------------CCCGc -5'
6535 5' -63.2 NC_001847.1 + 61264 0.74 0.174301
Target:  5'- -cGCGUCcGC-GGC-GCGCGCGGGCGc -3'
miRNA:   3'- caUGCGGaCGaCCGaCGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 13091 0.74 0.185717
Target:  5'- aGUGCGCaaCUGCcauuuuuugucgcGGCcgggGCGCGCGGGCGg -3'
miRNA:   3'- -CAUGCG--GACGa------------CCGa---CGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 133582 0.74 0.187531
Target:  5'- -cGCGCCgUGCUGGCcucgcgGCGCGUcuucggcccGGGCGc -3'
miRNA:   3'- caUGCGG-ACGACCGa-----CGCGCG---------CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 133157 0.74 0.187531
Target:  5'- -aGCGCCUuuuCUGcGCUGCuaccuGCGCGGGCGc -3'
miRNA:   3'- caUGCGGAc--GAC-CGACG-----CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 30769 0.74 0.187531
Target:  5'- -cGCGCCgUGCUGGCcucgcgGCGCGUcuucggcccGGGCGc -3'
miRNA:   3'- caUGCGG-ACGACCGa-----CGCGCG---------CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 50579 0.73 0.19167
Target:  5'- -cGCGCaUGCUGuucuaccuggagcGCUGCGaCGCGGGCGc -3'
miRNA:   3'- caUGCGgACGAC-------------CGACGC-GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 67832 0.73 0.192134
Target:  5'- aUACGCCgGCggGGCUGCcgGCGCuGGCGc -3'
miRNA:   3'- cAUGCGGaCGa-CCGACG--CGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 73043 0.73 0.192134
Target:  5'- -cGCGgacaaCCUGCUGGCgaagcaacGCGcCGCGGGCGc -3'
miRNA:   3'- caUGC-----GGACGACCGa-------CGC-GCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 102991 0.73 0.192134
Target:  5'- -cACGCCgucGC-GGC-GUGCGCGGGCGc -3'
miRNA:   3'- caUGCGGa--CGaCCGaCGCGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 80667 0.73 0.196836
Target:  5'- -gGCGCCggggaGCcgaacGGCUGCGCGCcGGCGg -3'
miRNA:   3'- caUGCGGa----CGa----CCGACGCGCGcCCGC- -5'
6535 5' -63.2 NC_001847.1 + 69259 0.73 0.196836
Target:  5'- cUACGCgCgGCUGGCgGCGgcCGCGGGCu -3'
miRNA:   3'- cAUGCG-GaCGACCGaCGC--GCGCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.