miRNA display CGI


Results 41 - 60 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 43000 0.66 0.531697
Target:  5'- -aACGCC-GCcggGGggGCGCGCcGGGCc -3'
miRNA:   3'- caUGCGGaCGa--CCgaCGCGCG-CCCGc -5'
6535 5' -63.2 NC_001847.1 + 54593 0.66 0.531697
Target:  5'- -gGCGgC-GCUGGCgGCGCGCGcccGCGc -3'
miRNA:   3'- caUGCgGaCGACCGaCGCGCGCc--CGC- -5'
6535 5' -63.2 NC_001847.1 + 19240 0.66 0.531697
Target:  5'- -aGCGCCUGCgcgagccGGCcaaGCgGCGCGagccGGCGg -3'
miRNA:   3'- caUGCGGACGa------CCGa--CG-CGCGC----CCGC- -5'
6535 5' -63.2 NC_001847.1 + 43103 0.66 0.528823
Target:  5'- -gGCGCCcGgaGGCgccgGCggugcccgcagacgGCGCGGGCc -3'
miRNA:   3'- caUGCGGaCgaCCGa---CG--------------CGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 3980 0.66 0.52214
Target:  5'- -gGCGCCggg-GGCcggGCGCGCGGccccGCGg -3'
miRNA:   3'- caUGCGGacgaCCGa--CGCGCGCC----CGC- -5'
6535 5' -63.2 NC_001847.1 + 80797 0.66 0.52214
Target:  5'- -cGCGuCCUcguugcGCUGGUccggGCGCGUGaGGCGc -3'
miRNA:   3'- caUGC-GGA------CGACCGa---CGCGCGC-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 66975 0.66 0.52214
Target:  5'- cGU-CGCUgcagagGCgGGCUGCgGCGCGGcGCc -3'
miRNA:   3'- -CAuGCGGa-----CGaCCGACG-CGCGCC-CGc -5'
6535 5' -63.2 NC_001847.1 + 131451 0.66 0.52214
Target:  5'- -cGCGCCUacCUGuGgUGCGCGCaGGCu -3'
miRNA:   3'- caUGCGGAc-GAC-CgACGCGCGcCCGc -5'
6535 5' -63.2 NC_001847.1 + 33566 0.66 0.52214
Target:  5'- -gACGCCgcggagGC-GGCcGUGCGCGGuGCc -3'
miRNA:   3'- caUGCGGa-----CGaCCGaCGCGCGCC-CGc -5'
6535 5' -63.2 NC_001847.1 + 70728 0.66 0.51265
Target:  5'- -cGCGCCgGCagUGGC-GCGCGUaaaGGCGg -3'
miRNA:   3'- caUGCGGaCG--ACCGaCGCGCGc--CCGC- -5'
6535 5' -63.2 NC_001847.1 + 61634 0.66 0.51265
Target:  5'- aUGCGCCcGCUGGaCUGCaGCGCcgccaccGCGg -3'
miRNA:   3'- cAUGCGGaCGACC-GACG-CGCGcc-----CGC- -5'
6535 5' -63.2 NC_001847.1 + 13945 0.66 0.51265
Target:  5'- aUGCGCgaGCUgcGGCUGCGgccCGUGGGa- -3'
miRNA:   3'- cAUGCGgaCGA--CCGACGC---GCGCCCgc -5'
6535 5' -63.2 NC_001847.1 + 59543 0.66 0.51265
Target:  5'- -cGCGgCaGCUGGCUG-GUGCuGGGCc -3'
miRNA:   3'- caUGCgGaCGACCGACgCGCG-CCCGc -5'
6535 5' -63.2 NC_001847.1 + 95088 0.66 0.51265
Target:  5'- -gGCGCUgGCgUGGCgggggGCGCGauuggGGGCGc -3'
miRNA:   3'- caUGCGGaCG-ACCGa----CGCGCg----CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 8450 0.66 0.51265
Target:  5'- -gGCGCCgggucGgaGGCgGCGC-CGGGCc -3'
miRNA:   3'- caUGCGGa----CgaCCGaCGCGcGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 111010 0.66 0.51265
Target:  5'- uUGCGCgCaGCaaGUUcGCGCGCGGGCu -3'
miRNA:   3'- cAUGCG-GaCGacCGA-CGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 111263 0.66 0.51265
Target:  5'- -gGCGCCgggucGgaGGCgGCGC-CGGGCc -3'
miRNA:   3'- caUGCGGa----CgaCCGaCGCGcGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 59895 0.66 0.51265
Target:  5'- cGUugGCgaGgagGGCggcgcGCGCGCGcGGCGa -3'
miRNA:   3'- -CAugCGgaCga-CCGa----CGCGCGC-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 68949 0.66 0.50699
Target:  5'- cUGCGCCUccagccaggcguccaGCgcGGCc-CGCGCGGGCa -3'
miRNA:   3'- cAUGCGGA---------------CGa-CCGacGCGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 88845 0.66 0.50699
Target:  5'- -gGCGCUacgGCUGGCcGUagaggaagacgcgguGCGCGcGGCGg -3'
miRNA:   3'- caUGCGGa--CGACCGaCG---------------CGCGC-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.