miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
655 5' -56.1 AC_000017.1 + 17852 0.68 0.416087
Target:  5'- cACUGaUCGCCGCgGCGAuugGCgccgUGCCc -3'
miRNA:   3'- -UGAC-GGCGGCGgUGUUca-CGaa--ACGG- -5'
655 5' -56.1 AC_000017.1 + 18794 0.72 0.219279
Target:  5'- -aUGUCGCCGCCAgAGGagcUGCUgagucGCCg -3'
miRNA:   3'- ugACGGCGGCGGUgUUC---ACGAaa---CGG- -5'
655 5' -56.1 AC_000017.1 + 24574 0.74 0.152378
Target:  5'- uUUGCCG-UGCCAgAGGUGCU-UGCCa -3'
miRNA:   3'- uGACGGCgGCGGUgUUCACGAaACGG- -5'
655 5' -56.1 AC_000017.1 + 26248 0.66 0.509078
Target:  5'- aGCUGCCGCCGCCACccacggacgagGAGgaauaCUgggacaGUCa -3'
miRNA:   3'- -UGACGGCGGCGGUG-----------UUCac---GAaa----CGG- -5'
655 5' -56.1 AC_000017.1 + 26807 0.81 0.049532
Target:  5'- uGCUGCCGCUGCCGCcGGUGCaguagggGCUg -3'
miRNA:   3'- -UGACGGCGGCGGUGuUCACGaaa----CGG- -5'
655 5' -56.1 AC_000017.1 + 26891 0.8 0.057607
Target:  5'- uGCUGCUGCCGCCGCuguGGauuucuuggGCUUUGUCa -3'
miRNA:   3'- -UGACGGCGGCGGUGu--UCa--------CGAAACGG- -5'
655 5' -56.1 AC_000017.1 + 27231 0.68 0.416087
Target:  5'- -gUGgCGCUGaCgACAGGUGCUggcGCCg -3'
miRNA:   3'- ugACgGCGGC-GgUGUUCACGAaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 27927 1.02 0.001384
Target:  5'- cACUGCCGCCGCCACAAG-GCUUUGCCc -3'
miRNA:   3'- -UGACGGCGGCGGUGUUCaCGAAACGG- -5'
655 5' -56.1 AC_000017.1 + 29231 0.7 0.286573
Target:  5'- uGCUGCCGCCGCUucuuGCu--UGCaUUGCa -3'
miRNA:   3'- -UGACGGCGGCGG----UGuucACGaAACGg -5'
655 5' -56.1 AC_000017.1 + 33153 0.69 0.359282
Target:  5'- aGCUGCUGa-GCCACAGGcUGCUguccaacUUGCg -3'
miRNA:   3'- -UGACGGCggCGGUGUUC-ACGA-------AACGg -5'
655 5' -56.1 AC_000017.1 + 33291 0.73 0.185727
Target:  5'- uGCUGCCGCCGCCGCucc-GUccUGCa -3'
miRNA:   3'- -UGACGGCGGCGGUGuucaCGaaACGg -5'
655 5' -56.1 AC_000017.1 + 35592 0.66 0.502589
Target:  5'- gGCUGCCGCuguggaagCGCUguauguuguucuggaGCGggagGGUGCUauuUUGCCu -3'
miRNA:   3'- -UGACGGCG--------GCGG---------------UGU----UCACGA---AACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.