miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
655 5' -56.1 AC_000017.1 + 2213 0.67 0.470712
Target:  5'- uGCUGCUGuuGCUGCugcUGCUccuccgucgguauuaUUGCCg -3'
miRNA:   3'- -UGACGGCggCGGUGuucACGA---------------AACGG- -5'
655 5' -56.1 AC_000017.1 + 2245 0.75 0.12822
Target:  5'- cCUGCCGCCGCCGCcgccugGCUUccuccUGCUg -3'
miRNA:   3'- uGACGGCGGCGGUGuuca--CGAA-----ACGG- -5'
655 5' -56.1 AC_000017.1 + 3791 0.68 0.416087
Target:  5'- gACUGCagccucCGCCGCCGCuucAGccGCUgcaGCCa -3'
miRNA:   3'- -UGACG------GCGGCGGUGu--UCa-CGAaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 4679 0.68 0.396861
Target:  5'- --gGCCGCCGCC-CGuggGCccaUUGCCa -3'
miRNA:   3'- ugaCGGCGGCGGuGUucaCGa--AACGG- -5'
655 5' -56.1 AC_000017.1 + 9534 0.75 0.134292
Target:  5'- --cGCCGUCGCCGCGGGgagaugaucgagcGCUUUGUCg -3'
miRNA:   3'- ugaCGGCGGCGGUGUUCa------------CGAAACGG- -5'
655 5' -56.1 AC_000017.1 + 9797 0.85 0.024564
Target:  5'- cGCUGCCGCCcGCCACG-GUGCUcaGCCu -3'
miRNA:   3'- -UGACGGCGG-CGGUGUuCACGAaaCGG- -5'
655 5' -56.1 AC_000017.1 + 11149 0.67 0.435873
Target:  5'- uCUGCCGCUGCUcu---UGCUcUUGCCg -3'
miRNA:   3'- uGACGGCGGCGGuguucACGA-AACGG- -5'
655 5' -56.1 AC_000017.1 + 11219 0.72 0.207555
Target:  5'- uCUGCCGCCGCguCAGccGCggaugUUGCCc -3'
miRNA:   3'- uGACGGCGGCGguGUUcaCGa----AACGG- -5'
655 5' -56.1 AC_000017.1 + 11544 0.69 0.342731
Target:  5'- --gGCgGCCGCCACGuGUGCgc-GCg -3'
miRNA:   3'- ugaCGgCGGCGGUGUuCACGaaaCGg -5'
655 5' -56.1 AC_000017.1 + 12276 0.66 0.530956
Target:  5'- --cGCCGCCgacguugccagcGCgCGCGGGUGCcaccGCCa -3'
miRNA:   3'- ugaCGGCGG------------CG-GUGUUCACGaaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 13267 0.66 0.48759
Target:  5'- uCUGCCGCCGgUuggucaGCAGGUaGUUcagggUUGCCu -3'
miRNA:   3'- uGACGGCGGCgG------UGUUCA-CGA-----AACGG- -5'
655 5' -56.1 AC_000017.1 + 13727 0.67 0.45619
Target:  5'- cGCgggGCCGCagCGCCuagaucggACAAGcUGCUUgGCCu -3'
miRNA:   3'- -UGa--CGGCG--GCGG--------UGUUC-ACGAAaCGG- -5'
655 5' -56.1 AC_000017.1 + 14267 0.69 0.342731
Target:  5'- --cGCCGCCGCCACug--GC---GCCg -3'
miRNA:   3'- ugaCGGCGGCGGUGuucaCGaaaCGG- -5'
655 5' -56.1 AC_000017.1 + 14553 0.66 0.530956
Target:  5'- --gGUCGCCGCC-CcAGUGCgaccgGUCg -3'
miRNA:   3'- ugaCGGCGGCGGuGuUCACGaaa--CGG- -5'
655 5' -56.1 AC_000017.1 + 15134 0.7 0.301843
Target:  5'- --cGCCGCUGCCAC---UGUUgUUGCCg -3'
miRNA:   3'- ugaCGGCGGCGGUGuucACGA-AACGG- -5'
655 5' -56.1 AC_000017.1 + 15230 0.67 0.45619
Target:  5'- aGCUGCCGCCcCCGC---UGCggagGCUg -3'
miRNA:   3'- -UGACGGCGGcGGUGuucACGaaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 16284 0.77 0.107647
Target:  5'- --gGCCGCCGCCGCGcguuGGgcgGCagUGCCg -3'
miRNA:   3'- ugaCGGCGGCGGUGU----UCa--CGaaACGG- -5'
655 5' -56.1 AC_000017.1 + 16363 0.69 0.32591
Target:  5'- aGCaGCCGCgGCCAUuAGUGCUaUGaCUc -3'
miRNA:   3'- -UGaCGGCGgCGGUGuUCACGAaAC-GG- -5'
655 5' -56.1 AC_000017.1 + 17545 0.67 0.445967
Target:  5'- --cGCCGUCGCCAgcccGUGCUg-GCCc -3'
miRNA:   3'- ugaCGGCGGCGGUguu-CACGAaaCGG- -5'
655 5' -56.1 AC_000017.1 + 17839 0.78 0.085008
Target:  5'- --cGCCGCCGCCGguGGUGCgcacgacgcaUGCCg -3'
miRNA:   3'- ugaCGGCGGCGGUguUCACGaa--------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.