miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
655 5' -56.1 AC_000017.1 + 27927 1.02 0.001384
Target:  5'- cACUGCCGCCGCCACAAG-GCUUUGCCc -3'
miRNA:   3'- -UGACGGCGGCGGUGUUCaCGAAACGG- -5'
655 5' -56.1 AC_000017.1 + 26248 0.66 0.509078
Target:  5'- aGCUGCCGCCGCCACccacggacgagGAGgaauaCUgggacaGUCa -3'
miRNA:   3'- -UGACGGCGGCGGUG-----------UUCac---GAaa----CGG- -5'
655 5' -56.1 AC_000017.1 + 15230 0.67 0.45619
Target:  5'- aGCUGCCGCCcCCGC---UGCggagGCUg -3'
miRNA:   3'- -UGACGGCGGcGGUGuucACGaaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 17545 0.67 0.445967
Target:  5'- --cGCCGUCGCCAgcccGUGCUg-GCCc -3'
miRNA:   3'- ugaCGGCGGCGGUguu-CACGAaaCGG- -5'
655 5' -56.1 AC_000017.1 + 17852 0.68 0.416087
Target:  5'- cACUGaUCGCCGCgGCGAuugGCgccgUGCCc -3'
miRNA:   3'- -UGAC-GGCGGCGgUGUUca-CGaa--ACGG- -5'
655 5' -56.1 AC_000017.1 + 3791 0.68 0.416087
Target:  5'- gACUGCagccucCGCCGCCGCuucAGccGCUgcaGCCa -3'
miRNA:   3'- -UGACG------GCGGCGGUGu--UCa-CGAaa-CGG- -5'
655 5' -56.1 AC_000017.1 + 33153 0.69 0.359282
Target:  5'- aGCUGCUGa-GCCACAGGcUGCUguccaacUUGCg -3'
miRNA:   3'- -UGACGGCggCGGUGUUC-ACGA-------AACGg -5'
655 5' -56.1 AC_000017.1 + 16363 0.69 0.32591
Target:  5'- aGCaGCCGCgGCCAUuAGUGCUaUGaCUc -3'
miRNA:   3'- -UGaCGGCGgCGGUGuUCACGAaAC-GG- -5'
655 5' -56.1 AC_000017.1 + 29231 0.7 0.286573
Target:  5'- uGCUGCCGCCGCUucuuGCu--UGCaUUGCa -3'
miRNA:   3'- -UGACGGCGGCGG----UGuucACGaAACGg -5'
655 5' -56.1 AC_000017.1 + 18794 0.72 0.219279
Target:  5'- -aUGUCGCCGCCAgAGGagcUGCUgagucGCCg -3'
miRNA:   3'- ugACGGCGGCGGUgUUC---ACGAaa---CGG- -5'
655 5' -56.1 AC_000017.1 + 33291 0.73 0.185727
Target:  5'- uGCUGCCGCCGCCGCucc-GUccUGCa -3'
miRNA:   3'- -UGACGGCGGCGGUGuucaCGaaACGg -5'
655 5' -56.1 AC_000017.1 + 24574 0.74 0.152378
Target:  5'- uUUGCCG-UGCCAgAGGUGCU-UGCCa -3'
miRNA:   3'- uGACGGCgGCGGUgUUCACGAaACGG- -5'
655 5' -56.1 AC_000017.1 + 11219 0.72 0.207555
Target:  5'- uCUGCCGCCGCguCAGccGCggaugUUGCCc -3'
miRNA:   3'- uGACGGCGGCGguGUUcaCGa----AACGG- -5'
655 5' -56.1 AC_000017.1 + 9534 0.75 0.134292
Target:  5'- --cGCCGUCGCCGCGGGgagaugaucgagcGCUUUGUCg -3'
miRNA:   3'- ugaCGGCGGCGGUGUUCa------------CGAAACGG- -5'
655 5' -56.1 AC_000017.1 + 2245 0.75 0.12822
Target:  5'- cCUGCCGCCGCCGCcgccugGCUUccuccUGCUg -3'
miRNA:   3'- uGACGGCGGCGGUGuuca--CGAA-----ACGG- -5'
655 5' -56.1 AC_000017.1 + 16284 0.77 0.107647
Target:  5'- --gGCCGCCGCCGCGcguuGGgcgGCagUGCCg -3'
miRNA:   3'- ugaCGGCGGCGGUGU----UCa--CGaaACGG- -5'
655 5' -56.1 AC_000017.1 + 17839 0.78 0.085008
Target:  5'- --cGCCGCCGCCGguGGUGCgcacgacgcaUGCCg -3'
miRNA:   3'- ugaCGGCGGCGGUguUCACGaa--------ACGG- -5'
655 5' -56.1 AC_000017.1 + 26891 0.8 0.057607
Target:  5'- uGCUGCUGCCGCCGCuguGGauuucuuggGCUUUGUCa -3'
miRNA:   3'- -UGACGGCGGCGGUGu--UCa--------CGAAACGG- -5'
655 5' -56.1 AC_000017.1 + 26807 0.81 0.049532
Target:  5'- uGCUGCCGCUGCCGCcGGUGCaguagggGCUg -3'
miRNA:   3'- -UGACGGCGGCGGUGuUCACGaaa----CGG- -5'
655 5' -56.1 AC_000017.1 + 12276 0.66 0.530956
Target:  5'- --cGCCGCCgacguugccagcGCgCGCGGGUGCcaccGCCa -3'
miRNA:   3'- ugaCGGCGG------------CG-GUGUUCACGaaa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.