Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
655 | 5' | -56.1 | AC_000017.1 | + | 27927 | 1.02 | 0.001384 |
Target: 5'- cACUGCCGCCGCCACAAG-GCUUUGCCc -3' miRNA: 3'- -UGACGGCGGCGGUGUUCaCGAAACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 9797 | 0.85 | 0.024564 |
Target: 5'- cGCUGCCGCCcGCCACG-GUGCUcaGCCu -3' miRNA: 3'- -UGACGGCGG-CGGUGUuCACGAaaCGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 26807 | 0.81 | 0.049532 |
Target: 5'- uGCUGCCGCUGCCGCcGGUGCaguagggGCUg -3' miRNA: 3'- -UGACGGCGGCGGUGuUCACGaaa----CGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 26891 | 0.8 | 0.057607 |
Target: 5'- uGCUGCUGCCGCCGCuguGGauuucuuggGCUUUGUCa -3' miRNA: 3'- -UGACGGCGGCGGUGu--UCa--------CGAAACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 17839 | 0.78 | 0.085008 |
Target: 5'- --cGCCGCCGCCGguGGUGCgcacgacgcaUGCCg -3' miRNA: 3'- ugaCGGCGGCGGUguUCACGaa--------ACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 16284 | 0.77 | 0.107647 |
Target: 5'- --gGCCGCCGCCGCGcguuGGgcgGCagUGCCg -3' miRNA: 3'- ugaCGGCGGCGGUGU----UCa--CGaaACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 2245 | 0.75 | 0.12822 |
Target: 5'- cCUGCCGCCGCCGCcgccugGCUUccuccUGCUg -3' miRNA: 3'- uGACGGCGGCGGUGuuca--CGAA-----ACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 9534 | 0.75 | 0.134292 |
Target: 5'- --cGCCGUCGCCGCGGGgagaugaucgagcGCUUUGUCg -3' miRNA: 3'- ugaCGGCGGCGGUGUUCa------------CGAAACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 24574 | 0.74 | 0.152378 |
Target: 5'- uUUGCCG-UGCCAgAGGUGCU-UGCCa -3' miRNA: 3'- uGACGGCgGCGGUgUUCACGAaACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 33291 | 0.73 | 0.185727 |
Target: 5'- uGCUGCCGCCGCCGCucc-GUccUGCa -3' miRNA: 3'- -UGACGGCGGCGGUGuucaCGaaACGg -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 11219 | 0.72 | 0.207555 |
Target: 5'- uCUGCCGCCGCguCAGccGCggaugUUGCCc -3' miRNA: 3'- uGACGGCGGCGguGUUcaCGa----AACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 18794 | 0.72 | 0.219279 |
Target: 5'- -aUGUCGCCGCCAgAGGagcUGCUgagucGCCg -3' miRNA: 3'- ugACGGCGGCGGUgUUC---ACGAaa---CGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 29231 | 0.7 | 0.286573 |
Target: 5'- uGCUGCCGCCGCUucuuGCu--UGCaUUGCa -3' miRNA: 3'- -UGACGGCGGCGG----UGuucACGaAACGg -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 15134 | 0.7 | 0.301843 |
Target: 5'- --cGCCGCUGCCAC---UGUUgUUGCCg -3' miRNA: 3'- ugaCGGCGGCGGUGuucACGA-AACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 16363 | 0.69 | 0.32591 |
Target: 5'- aGCaGCCGCgGCCAUuAGUGCUaUGaCUc -3' miRNA: 3'- -UGaCGGCGgCGGUGuUCACGAaAC-GG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 11544 | 0.69 | 0.342731 |
Target: 5'- --gGCgGCCGCCACGuGUGCgc-GCg -3' miRNA: 3'- ugaCGgCGGCGGUGUuCACGaaaCGg -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 14267 | 0.69 | 0.342731 |
Target: 5'- --cGCCGCCGCCACug--GC---GCCg -3' miRNA: 3'- ugaCGGCGGCGGUGuucaCGaaaCGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 33153 | 0.69 | 0.359282 |
Target: 5'- aGCUGCUGa-GCCACAGGcUGCUguccaacUUGCg -3' miRNA: 3'- -UGACGGCggCGGUGUUC-ACGA-------AACGg -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 4679 | 0.68 | 0.396861 |
Target: 5'- --gGCCGCCGCC-CGuggGCccaUUGCCa -3' miRNA: 3'- ugaCGGCGGCGGuGUucaCGa--AACGG- -5' |
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655 | 5' | -56.1 | AC_000017.1 | + | 17852 | 0.68 | 0.416087 |
Target: 5'- cACUGaUCGCCGCgGCGAuugGCgccgUGCCc -3' miRNA: 3'- -UGAC-GGCGGCGgUGUUca-CGaa--ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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