miRNA display CGI


Results 1 - 20 of 672 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6558 3' -62.3 NC_001847.1 + 3783 0.66 0.625044
Target:  5'- cGGGCGggaugugcugcacgaCGGCGUgccggcacgGGGCGUcggccGCGAGcguGGCg -3'
miRNA:   3'- uCCCGC---------------GCCGCA---------CCCGCG-----CGCUU---UCG- -5'
6558 3' -62.3 NC_001847.1 + 132593 0.66 0.62109
Target:  5'- gAGGGCcgcccCGGCcc-GGCG-GCGGGAGCg -3'
miRNA:   3'- -UCCCGc----GCCGcacCCGCgCGCUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 52308 0.66 0.62109
Target:  5'- cGGGCGCgGGCGgcgccaaccGGGacaacaCGCugGUGGAAGCg -3'
miRNA:   3'- uCCCGCG-CCGCa--------CCC------GCG--CGCUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 86546 0.66 0.62109
Target:  5'- -cGGCGCGGCuuaaggGGGaCGC-CGAGgacGGCg -3'
miRNA:   3'- ucCCGCGCCGca----CCC-GCGcGCUU---UCG- -5'
6558 3' -62.3 NC_001847.1 + 19739 0.66 0.62109
Target:  5'- cGGaCGCGGC--GGGCcgcuuaGCGgGAAGGCg -3'
miRNA:   3'- uCCcGCGCCGcaCCCG------CGCgCUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 49907 0.66 0.62109
Target:  5'- uGGGCcCGGCcgcgGUGGcGCuGCGCGu--GCg -3'
miRNA:   3'- uCCCGcGCCG----CACC-CG-CGCGCuuuCG- -5'
6558 3' -62.3 NC_001847.1 + 106626 0.66 0.62109
Target:  5'- cGGGCgGCGGC---GGCGCGCugccGGGCc -3'
miRNA:   3'- uCCCG-CGCCGcacCCGCGCGcu--UUCG- -5'
6558 3' -62.3 NC_001847.1 + 124377 0.66 0.62109
Target:  5'- aAGGGC-CGGgGagaGGGCGgGagaGggGGCc -3'
miRNA:   3'- -UCCCGcGCCgCa--CCCGCgCg--CuuUCG- -5'
6558 3' -62.3 NC_001847.1 + 124987 0.66 0.62109
Target:  5'- cGGGC-CGGCcUGcuCGgGCGAGAGCu -3'
miRNA:   3'- uCCCGcGCCGcACccGCgCGCUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 87619 0.66 0.62109
Target:  5'- -cGGCGgcuuUGGCGcccGGGCuGCGCuGGAAGCc -3'
miRNA:   3'- ucCCGC----GCCGCa--CCCG-CGCG-CUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 122019 0.66 0.62109
Target:  5'- aGGcGGCGCGGCGccgcccGCGCGCcccGGCc -3'
miRNA:   3'- -UC-CCGCGCCGCacc---CGCGCGcuuUCG- -5'
6558 3' -62.3 NC_001847.1 + 50236 0.66 0.62109
Target:  5'- cAGGGCGCGGCa--GaCGaCGCGGcgAAGCu -3'
miRNA:   3'- -UCCCGCGCCGcacCcGC-GCGCU--UUCG- -5'
6558 3' -62.3 NC_001847.1 + 29780 0.66 0.62109
Target:  5'- gAGGGCcgcccCGGCcc-GGCG-GCGGGAGCg -3'
miRNA:   3'- -UCCCGc----GCCGcacCCGCgCGCUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 11895 0.66 0.62109
Target:  5'- -uGGUGCGGcCG-GGGUcCGCGcuGGCg -3'
miRNA:   3'- ucCCGCGCC-GCaCCCGcGCGCuuUCG- -5'
6558 3' -62.3 NC_001847.1 + 101910 0.66 0.62109
Target:  5'- gAGGcGcCGCGGCGcccGGCGCgGCGccAAGCc -3'
miRNA:   3'- -UCC-C-GCGCCGCac-CCGCG-CGCu-UUCG- -5'
6558 3' -62.3 NC_001847.1 + 97807 0.66 0.62109
Target:  5'- cGGuCGCGcGCGUGGcCGCGuCGGgcGCg -3'
miRNA:   3'- uCCcGCGC-CGCACCcGCGC-GCUuuCG- -5'
6558 3' -62.3 NC_001847.1 + 92277 0.66 0.62109
Target:  5'- --aGCGUGGCGcGGuGCGCGgcuaGGAAGUg -3'
miRNA:   3'- uccCGCGCCGCaCC-CGCGCg---CUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 22174 0.66 0.62109
Target:  5'- cGGGC-CGGCcUGcuCGgGCGAGAGCu -3'
miRNA:   3'- uCCCGcGCCGcACccGCgCGCUUUCG- -5'
6558 3' -62.3 NC_001847.1 + 21564 0.66 0.62109
Target:  5'- aAGGGC-CGGgGagaGGGCGgGagaGggGGCc -3'
miRNA:   3'- -UCCCGcGCCgCa--CCCGCgCg--CuuUCG- -5'
6558 3' -62.3 NC_001847.1 + 3813 0.66 0.62109
Target:  5'- cGGGCgGCGGC---GGCGCGCugccGGGCc -3'
miRNA:   3'- uCCCG-CGCCGcacCCGCGCGcu--UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.