Results 1 - 20 of 672 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6558 | 3' | -62.3 | NC_001847.1 | + | 3783 | 0.66 | 0.625044 |
Target: 5'- cGGGCGggaugugcugcacgaCGGCGUgccggcacgGGGCGUcggccGCGAGcguGGCg -3' miRNA: 3'- uCCCGC---------------GCCGCA---------CCCGCG-----CGCUU---UCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 29780 | 0.66 | 0.62109 |
Target: 5'- gAGGGCcgcccCGGCcc-GGCG-GCGGGAGCg -3' miRNA: 3'- -UCCCGc----GCCGcacCCGCgCGCUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 132593 | 0.66 | 0.62109 |
Target: 5'- gAGGGCcgcccCGGCcc-GGCG-GCGGGAGCg -3' miRNA: 3'- -UCCCGc----GCCGcacCCGCgCGCUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 19739 | 0.66 | 0.62109 |
Target: 5'- cGGaCGCGGC--GGGCcgcuuaGCGgGAAGGCg -3' miRNA: 3'- uCCcGCGCCGcaCCCG------CGCgCUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 124987 | 0.66 | 0.62109 |
Target: 5'- cGGGC-CGGCcUGcuCGgGCGAGAGCu -3' miRNA: 3'- uCCCGcGCCGcACccGCgCGCUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 50236 | 0.66 | 0.62109 |
Target: 5'- cAGGGCGCGGCa--GaCGaCGCGGcgAAGCu -3' miRNA: 3'- -UCCCGCGCCGcacCcGC-GCGCU--UUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 49907 | 0.66 | 0.62109 |
Target: 5'- uGGGCcCGGCcgcgGUGGcGCuGCGCGu--GCg -3' miRNA: 3'- uCCCGcGCCG----CACC-CG-CGCGCuuuCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 106626 | 0.66 | 0.62109 |
Target: 5'- cGGGCgGCGGC---GGCGCGCugccGGGCc -3' miRNA: 3'- uCCCG-CGCCGcacCCGCGCGcu--UUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 124377 | 0.66 | 0.62109 |
Target: 5'- aAGGGC-CGGgGagaGGGCGgGagaGggGGCc -3' miRNA: 3'- -UCCCGcGCCgCa--CCCGCgCg--CuuUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 52308 | 0.66 | 0.62109 |
Target: 5'- cGGGCGCgGGCGgcgccaaccGGGacaacaCGCugGUGGAAGCg -3' miRNA: 3'- uCCCGCG-CCGCa--------CCC------GCG--CGCUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 86546 | 0.66 | 0.62109 |
Target: 5'- -cGGCGCGGCuuaaggGGGaCGC-CGAGgacGGCg -3' miRNA: 3'- ucCCGCGCCGca----CCC-GCGcGCUU---UCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 87619 | 0.66 | 0.62109 |
Target: 5'- -cGGCGgcuuUGGCGcccGGGCuGCGCuGGAAGCc -3' miRNA: 3'- ucCCGC----GCCGCa--CCCG-CGCG-CUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 3813 | 0.66 | 0.62109 |
Target: 5'- cGGGCgGCGGC---GGCGCGCugccGGGCc -3' miRNA: 3'- uCCCG-CGCCGcacCCGCGCGcu--UUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 21564 | 0.66 | 0.62109 |
Target: 5'- aAGGGC-CGGgGagaGGGCGgGagaGggGGCc -3' miRNA: 3'- -UCCCGcGCCgCa--CCCGCgCg--CuuUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 22174 | 0.66 | 0.62109 |
Target: 5'- cGGGC-CGGCcUGcuCGgGCGAGAGCu -3' miRNA: 3'- uCCCGcGCCGcACccGCgCGCUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 92277 | 0.66 | 0.62109 |
Target: 5'- --aGCGUGGCGcGGuGCGCGgcuaGGAAGUg -3' miRNA: 3'- uccCGCGCCGCaCC-CGCGCg---CUUUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 97807 | 0.66 | 0.62109 |
Target: 5'- cGGuCGCGcGCGUGGcCGCGuCGGgcGCg -3' miRNA: 3'- uCCcGCGC-CGCACCcGCGC-GCUuuCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 101910 | 0.66 | 0.62109 |
Target: 5'- gAGGcGcCGCGGCGcccGGCGCgGCGccAAGCc -3' miRNA: 3'- -UCC-C-GCGCCGCac-CCGCG-CGCu-UUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 11895 | 0.66 | 0.62109 |
Target: 5'- -uGGUGCGGcCG-GGGUcCGCGcuGGCg -3' miRNA: 3'- ucCCGCGCC-GCaCCCGcGCGCuuUCG- -5' |
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6558 | 3' | -62.3 | NC_001847.1 | + | 122019 | 0.66 | 0.62109 |
Target: 5'- aGGcGGCGCGGCGccgcccGCGCGCcccGGCc -3' miRNA: 3'- -UC-CCGCGCCGCacc---CGCGCGcuuUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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