miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6558 5' -53.2 NC_001847.1 + 101922 0.66 0.963441
Target:  5'- -cGCcCGGcgCG-GCGCCaaGCCGAGCCa -3'
miRNA:   3'- caCGaGCUa-GCaCGUGGa-CGGUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 28827 0.66 0.963441
Target:  5'- -gGCgCGGUgGUGCGgCUGCUAGaacgcgcgGCCg -3'
miRNA:   3'- caCGaGCUAgCACGUgGACGGUU--------UGG- -5'
6558 5' -53.2 NC_001847.1 + 72187 0.66 0.963441
Target:  5'- gGUGCagUCGGUCGUgGUGCCggaucUGCCccccgacgagGAGCCg -3'
miRNA:   3'- -CACG--AGCUAGCA-CGUGG-----ACGG----------UUUGG- -5'
6558 5' -53.2 NC_001847.1 + 79571 0.66 0.963441
Target:  5'- aUGCaaacaCGAUCGUGCugCgggcGCCGu-CCg -3'
miRNA:   3'- cACGa----GCUAGCACGugGa---CGGUuuGG- -5'
6558 5' -53.2 NC_001847.1 + 49087 0.66 0.963441
Target:  5'- -cGCUCGcAUcCGUggcccccaGCGCCUcGCCcAACCa -3'
miRNA:   3'- caCGAGC-UA-GCA--------CGUGGA-CGGuUUGG- -5'
6558 5' -53.2 NC_001847.1 + 98879 0.66 0.963441
Target:  5'- -gGCg----CGUGCGCCUGggcggcCCAGGCCg -3'
miRNA:   3'- caCGagcuaGCACGUGGAC------GGUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 90102 0.66 0.963441
Target:  5'- -gGCgaCGAUCuUGUACCcgGCaCAAGCCg -3'
miRNA:   3'- caCGa-GCUAGcACGUGGa-CG-GUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 112237 0.66 0.959856
Target:  5'- --uUUCG-UCGUG-ACgUGCCAAACCa -3'
miRNA:   3'- cacGAGCuAGCACgUGgACGGUUUGG- -5'
6558 5' -53.2 NC_001847.1 + 84166 0.66 0.959485
Target:  5'- -cGCUCGAgc-UGCGCC-GCCGAcugggcgucgugcGCCa -3'
miRNA:   3'- caCGAGCUagcACGUGGaCGGUU-------------UGG- -5'
6558 5' -53.2 NC_001847.1 + 42916 0.66 0.959485
Target:  5'- -gGCUCGAgagCGcGCGCUgcugGCCGcccaagcGGCCg -3'
miRNA:   3'- caCGAGCUa--GCaCGUGGa---CGGU-------UUGG- -5'
6558 5' -53.2 NC_001847.1 + 49842 0.66 0.956037
Target:  5'- cUGCaggCGGcCGUGCugCUGCUGucCCa -3'
miRNA:   3'- cACGa--GCUaGCACGugGACGGUuuGG- -5'
6558 5' -53.2 NC_001847.1 + 128447 0.66 0.956037
Target:  5'- -cGCUCGGcccugcgCGcGCGCCcgGCCGGccGCCg -3'
miRNA:   3'- caCGAGCUa------GCaCGUGGa-CGGUU--UGG- -5'
6558 5' -53.2 NC_001847.1 + 29059 0.66 0.956037
Target:  5'- cGUGCUCGccggccgCGcgGCGCCggcGCCccuGCCg -3'
miRNA:   3'- -CACGAGCua-----GCa-CGUGGa--CGGuu-UGG- -5'
6558 5' -53.2 NC_001847.1 + 9003 0.66 0.956037
Target:  5'- cUGUUUGccAUCGUGCGcggccgcgacccCCUGCUAGACg -3'
miRNA:   3'- cACGAGC--UAGCACGU------------GGACGGUUUGg -5'
6558 5' -53.2 NC_001847.1 + 79083 0.66 0.956037
Target:  5'- cGUGCgacgUGugccCGUGCGCCgcGCCGuGCCu -3'
miRNA:   3'- -CACGa---GCua--GCACGUGGa-CGGUuUGG- -5'
6558 5' -53.2 NC_001847.1 + 131872 0.66 0.956037
Target:  5'- cGUGCUCGccggccgCGcgGCGCCggcGCCccuGCCg -3'
miRNA:   3'- -CACGAGCua-----GCa-CGUGGa--CGGuu-UGG- -5'
6558 5' -53.2 NC_001847.1 + 66155 0.66 0.956037
Target:  5'- cGUGCUgGA-CGUGCucucgGCCgUGCCcgcgcGGGCCg -3'
miRNA:   3'- -CACGAgCUaGCACG-----UGG-ACGG-----UUUGG- -5'
6558 5' -53.2 NC_001847.1 + 29441 0.66 0.956037
Target:  5'- -cGCUgGggCGUgGCGCCgcccgcgGCCGAagcGCCg -3'
miRNA:   3'- caCGAgCuaGCA-CGUGGa------CGGUU---UGG- -5'
6558 5' -53.2 NC_001847.1 + 38027 0.66 0.956037
Target:  5'- gGUGCUgUGggCGcGCGCC-GCCGcGCCg -3'
miRNA:   3'- -CACGA-GCuaGCaCGUGGaCGGUuUGG- -5'
6558 5' -53.2 NC_001847.1 + 56791 0.66 0.956037
Target:  5'- -cGCUCGAggggcuguUCGccgccgcgGCGCCcaaGCCGGGCCc -3'
miRNA:   3'- caCGAGCU--------AGCa-------CGUGGa--CGGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.