miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6561 3' -65.2 NC_001847.1 + 17807 0.66 0.483829
Target:  5'- gGCCgCgGGGGGCgAGGCCgccccccgccgcuaGGU-CGCCCa -3'
miRNA:   3'- -CGG-GgUCCCCG-UUCGGa-------------CCGcGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 116152 0.66 0.48022
Target:  5'- gGCCCgAGGcgcuGGC-GGCCgcgGGCGCcgcgGCCg -3'
miRNA:   3'- -CGGGgUCC----CCGuUCGGa--CCGCG----CGGg -5'
6561 3' -65.2 NC_001847.1 + 42376 0.66 0.48022
Target:  5'- cGCCUCGGGGGgGaugagcucgcggAGCCgcauguucGCGCGCgCu -3'
miRNA:   3'- -CGGGGUCCCCgU------------UCGGac------CGCGCGgG- -5'
6561 3' -65.2 NC_001847.1 + 129471 0.66 0.48022
Target:  5'- gGCCCCGGccGGCccaccuucgcGCCUgGGCGgGCCUu -3'
miRNA:   3'- -CGGGGUCc-CCGuu--------CGGA-CCGCgCGGG- -5'
6561 3' -65.2 NC_001847.1 + 25294 0.66 0.48022
Target:  5'- cGCaCCAcGuGGCGcccucGCCgacgagGGCGCGCCCa -3'
miRNA:   3'- -CGgGGUcC-CCGUu----CGGa-----CCGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 29503 0.66 0.48022
Target:  5'- gGCCgCGGGcGGCGcuucGGCCgcaGaGCuCGCCCg -3'
miRNA:   3'- -CGGgGUCC-CCGU----UCGGa--C-CGcGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 74339 0.66 0.48022
Target:  5'- uGCCgCAGGcGcGCGcGCUggUGGCGCGCg- -3'
miRNA:   3'- -CGGgGUCC-C-CGUuCGG--ACCGCGCGgg -5'
6561 3' -65.2 NC_001847.1 + 37180 0.66 0.48022
Target:  5'- aGCCUCGcgccGGGaGAGCCcGGUgcgagGCGCCCg -3'
miRNA:   3'- -CGGGGUc---CCCgUUCGGaCCG-----CGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 82805 0.66 0.48022
Target:  5'- uGgCCgAGGcGGCGGGCgaaggcgacGGCGCGaCCCg -3'
miRNA:   3'- -CgGGgUCC-CCGUUCGga-------CCGCGC-GGG- -5'
6561 3' -65.2 NC_001847.1 + 72311 0.66 0.48022
Target:  5'- cGCCUCgGGGGGCugcGGCagCUGcGCGacucgGCCCg -3'
miRNA:   3'- -CGGGG-UCCCCGu--UCG--GAC-CGCg----CGGG- -5'
6561 3' -65.2 NC_001847.1 + 2419 0.66 0.48022
Target:  5'- cCCCCgAGGGGCcccccgcggcGGCCggcagGGC-CGCCg -3'
miRNA:   3'- cGGGG-UCCCCGu---------UCGGa----CCGcGCGGg -5'
6561 3' -65.2 NC_001847.1 + 4969 0.66 0.48022
Target:  5'- cGCgCCGGGGGgGcAGCUggGGUGCGgCg -3'
miRNA:   3'- -CGgGGUCCCCgU-UCGGa-CCGCGCgGg -5'
6561 3' -65.2 NC_001847.1 + 72988 0.66 0.48022
Target:  5'- cGCCCgCGcGGGaGCuGGCCgcagcgcgGGCGCGgaaCCa -3'
miRNA:   3'- -CGGG-GU-CCC-CGuUCGGa-------CCGCGCg--GG- -5'
6561 3' -65.2 NC_001847.1 + 30489 0.66 0.48022
Target:  5'- cGCCUgGGccGGGC--GCUggacgGGCGCGCCg -3'
miRNA:   3'- -CGGGgUC--CCCGuuCGGa----CCGCGCGGg -5'
6561 3' -65.2 NC_001847.1 + 132972 0.66 0.48022
Target:  5'- -gCCCAGGcGGCGcgggcgcugcgAGaCCUGGUGCuGCgCa -3'
miRNA:   3'- cgGGGUCC-CCGU-----------UC-GGACCGCG-CGgG- -5'
6561 3' -65.2 NC_001847.1 + 99134 0.66 0.48022
Target:  5'- aGCCCCAGcaccacgcccGcGGCc-GCCUGcagcgcggcugcGCGCGCCUu -3'
miRNA:   3'- -CGGGGUC----------C-CCGuuCGGAC------------CGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 79547 0.66 0.48022
Target:  5'- gGCCggGGGGGCuggGGCUcgcggGGgGCGCCg -3'
miRNA:   3'- -CGGggUCCCCGu--UCGGa----CCgCGCGGg -5'
6561 3' -65.2 NC_001847.1 + 52113 0.66 0.48022
Target:  5'- cGCaCUAGcGGccGCGGGCC-GGCGgCGCCCc -3'
miRNA:   3'- -CGgGGUC-CC--CGUUCGGaCCGC-GCGGG- -5'
6561 3' -65.2 NC_001847.1 + 46188 0.66 0.48022
Target:  5'- uUCCCGGGcGCGgagaGGUC-GGCGUGUCCg -3'
miRNA:   3'- cGGGGUCCcCGU----UCGGaCCGCGCGGG- -5'
6561 3' -65.2 NC_001847.1 + 26658 0.66 0.48022
Target:  5'- gGCCCCGGccGGCccaccuucgcGCCUgGGCGgGCCUu -3'
miRNA:   3'- -CGGGGUCc-CCGuu--------CGGA-CCGCgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.