miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 3' -61.7 NC_001847.1 + 40113 1.06 0.001003
Target:  5'- gUUGGUAGGUGCGGCUGCGCGUGGGCGa -3'
miRNA:   3'- -AACCAUCCACGCCGACGCGCACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 115678 0.76 0.150774
Target:  5'- ----cGGGUgaGCGGCUGCGCGgGGGCGa -3'
miRNA:   3'- aaccaUCCA--CGCCGACGCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 100519 0.73 0.246181
Target:  5'- gUGGUGGGcUGCGGgUcgcggaGUGgGUGGGCGg -3'
miRNA:   3'- aACCAUCC-ACGCCgA------CGCgCACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 42478 0.71 0.29659
Target:  5'- cUGGUGGG-GCGGCgcgccgaaGCGCuGcGGGCGa -3'
miRNA:   3'- aACCAUCCaCGCCGa-------CGCG-CaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 7244 0.71 0.317461
Target:  5'- cUGGUcGG-GUGGCUGUGCG-GGcGCGg -3'
miRNA:   3'- aACCAuCCaCGCCGACGCGCaCC-CGC- -5'
6562 3' -61.7 NC_001847.1 + 15285 0.71 0.323935
Target:  5'- --uGUGGGguacgccUGCuGGCUGCGCGcGGGCGu -3'
miRNA:   3'- aacCAUCC-------ACG-CCGACGCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 55695 0.69 0.394828
Target:  5'- -aGG-GGGUGCGuGCaaacgGCGCGaggGGGCGa -3'
miRNA:   3'- aaCCaUCCACGC-CGa----CGCGCa--CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 23066 0.69 0.411698
Target:  5'- cUGGgcugGGGUG-GGCUGgGCugggGUGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCG----CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23096 0.69 0.411698
Target:  5'- cUGGgcugGGGUG-GGCUGgGCugggGUGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCG----CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 125879 0.69 0.411698
Target:  5'- cUGGgcugGGGUG-GGCUGgGCugggGUGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCG----CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 125909 0.69 0.411698
Target:  5'- cUGGgcugGGGUG-GGCUGgGCugggGUGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCG----CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 120188 0.69 0.420299
Target:  5'- aUGGU-GGUGCuGGCcGCGCGaGcGGCGc -3'
miRNA:   3'- aACCAuCCACG-CCGaCGCGCaC-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 43239 0.69 0.420299
Target:  5'- -cGGUGGGggcgcgcggGCGGCgcgGCGCccgggGGGCa -3'
miRNA:   3'- aaCCAUCCa--------CGCCGa--CGCGca---CCCGc -5'
6562 3' -61.7 NC_001847.1 + 8372 0.69 0.420299
Target:  5'- --cGUAGGgcGCGGCa--GCGUGGGCGu -3'
miRNA:   3'- aacCAUCCa-CGCCGacgCGCACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 95647 0.69 0.425511
Target:  5'- cUGGcgcgGGGgGCGGCgcgggccgcucugGCGCGggGGGCGg -3'
miRNA:   3'- aACCa---UCCaCGCCGa------------CGCGCa-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 95701 0.69 0.425511
Target:  5'- cUGGcgcgGGGgGCGGCgcgggccgcucugGCGCGggGGGCGg -3'
miRNA:   3'- aACCa---UCCaCGCCGa------------CGCGCa-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 95755 0.69 0.425511
Target:  5'- cUGGcgcgGGGgGCGGCgcgggccgcucugGCGCGggGGGCGg -3'
miRNA:   3'- aACCa---UCCaCGCCGa------------CGCGCa-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 22956 0.69 0.429008
Target:  5'- gUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23016 0.69 0.429008
Target:  5'- gUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 72774 0.69 0.429008
Target:  5'- -cGGgcGGcGCGGC-GUGCcUGGGCGa -3'
miRNA:   3'- aaCCauCCaCGCCGaCGCGcACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.