miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 3' -61.7 NC_001847.1 + 80 0.66 0.60043
Target:  5'- -gGGUGGGggauggGCGcGgaGCGCGaGGGUa -3'
miRNA:   3'- aaCCAUCCa-----CGC-CgaCGCGCaCCCGc -5'
6562 3' -61.7 NC_001847.1 + 3707 0.66 0.590405
Target:  5'- -aGGUAGGcGCGGCaaucgcGCGCGccGGCc -3'
miRNA:   3'- aaCCAUCCaCGCCGa-----CGCGCacCCGc -5'
6562 3' -61.7 NC_001847.1 + 4978 0.66 0.558555
Target:  5'- -gGGgcagcugGGGUGCGGCggccgcggcaaaGCGCGgcgGcGGCGg -3'
miRNA:   3'- aaCCa------UCCACGCCGa-----------CGCGCa--C-CCGC- -5'
6562 3' -61.7 NC_001847.1 + 5862 0.66 0.610477
Target:  5'- cUGGcccucgAGGUGguccaGcGCUGCGCGcaGGGCGg -3'
miRNA:   3'- aACCa-----UCCACg----C-CGACGCGCa-CCCGC- -5'
6562 3' -61.7 NC_001847.1 + 7244 0.71 0.317461
Target:  5'- cUGGUcGG-GUGGCUGUGCG-GGcGCGg -3'
miRNA:   3'- aACCAuCCaCGCCGACGCGCaCC-CGC- -5'
6562 3' -61.7 NC_001847.1 + 8137 0.69 0.437822
Target:  5'- -gGGgcGG-GCGGUgcUGCGCGaGGGCu -3'
miRNA:   3'- aaCCauCCaCGCCG--ACGCGCaCCCGc -5'
6562 3' -61.7 NC_001847.1 + 8372 0.69 0.420299
Target:  5'- --cGUAGGgcGCGGCa--GCGUGGGCGu -3'
miRNA:   3'- aacCAUCCa-CGCCGacgCGCACCCGC- -5'
6562 3' -61.7 NC_001847.1 + 10857 0.66 0.60043
Target:  5'- gUGGccgAGGcGCGGC-GgGCGcGGGCGc -3'
miRNA:   3'- aACCa--UCCaCGCCGaCgCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 12951 0.68 0.474079
Target:  5'- -cGGUGGG-GCGGCggGC-CGgGGGUGg -3'
miRNA:   3'- aaCCAUCCaCGCCGa-CGcGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 15285 0.71 0.323935
Target:  5'- --uGUGGGguacgccUGCuGGCUGCGCGcGGGCGu -3'
miRNA:   3'- aacCAUCC-------ACG-CCGACGCGCaCCCGC- -5'
6562 3' -61.7 NC_001847.1 + 18215 0.66 0.609472
Target:  5'- -cGGUacGGGcugUGCGGCUcucgGCGCGUGcucgcguGGCGc -3'
miRNA:   3'- aaCCA--UCC---ACGCCGA----CGCGCAC-------CCGC- -5'
6562 3' -61.7 NC_001847.1 + 22917 0.69 0.437822
Target:  5'- cUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 22956 0.69 0.429008
Target:  5'- gUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 22984 0.67 0.502232
Target:  5'- -gGGUGGGcUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aaCCAUCC-ACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23016 0.69 0.429008
Target:  5'- gUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23066 0.69 0.411698
Target:  5'- cUGGgcugGGGUG-GGCUGgGCugggGUGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCG----CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23096 0.69 0.411698
Target:  5'- cUGGgcugGGGUG-GGCUGgGCugggGUGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCG----CACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23126 0.69 0.437822
Target:  5'- cUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 23166 0.69 0.437822
Target:  5'- cUGGgcugGGGUG-GGCUGgGC-UGGGCu -3'
miRNA:   3'- aACCa---UCCACgCCGACgCGcACCCGc -5'
6562 3' -61.7 NC_001847.1 + 25223 0.67 0.518508
Target:  5'- -aGGUGGGcUGCGGCuUGCauGCaagcacacgggauaGUGGGCu -3'
miRNA:   3'- aaCCAUCC-ACGCCG-ACG--CG--------------CACCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.