miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6566 5' -56.4 NC_001847.1 + 2232 0.66 0.919958
Target:  5'- gCCGcgGcgCUGGGCgCGGGCGUGuGGu -3'
miRNA:   3'- -GGCa-CaaGACCUGgGCCUGCAUcCCc -5'
6566 5' -56.4 NC_001847.1 + 105045 0.66 0.919958
Target:  5'- gCCGcgGcgCUGGGCgCGGGCGUGuGGu -3'
miRNA:   3'- -GGCa-CaaGACCUGgGCCUGCAUcCCc -5'
6566 5' -56.4 NC_001847.1 + 95266 0.66 0.919958
Target:  5'- cCCGgc--CUGGACCCGGgccGCGUGGa-- -3'
miRNA:   3'- -GGCacaaGACCUGGGCC---UGCAUCccc -5'
6566 5' -56.4 NC_001847.1 + 22942 0.66 0.919958
Target:  5'- --cUGggCUGGGCUgGGugGgcuGGGGu -3'
miRNA:   3'- ggcACaaGACCUGGgCCugCau-CCCC- -5'
6566 5' -56.4 NC_001847.1 + 69429 0.66 0.914332
Target:  5'- cCCGgcggGcUCUGGGaugaacgcgUCCGGGCGUAGcucgcGGGg -3'
miRNA:   3'- -GGCa---CaAGACCU---------GGGCCUGCAUC-----CCC- -5'
6566 5' -56.4 NC_001847.1 + 81064 0.66 0.902396
Target:  5'- gCGUGggCgGGGCCUGGcUGgacGGGGa -3'
miRNA:   3'- gGCACaaGaCCUGGGCCuGCau-CCCC- -5'
6566 5' -56.4 NC_001847.1 + 115896 0.66 0.902396
Target:  5'- aCCG-GUccgCcGGACgCGGACGggaucgaagGGGGGg -3'
miRNA:   3'- -GGCaCAa--GaCCUGgGCCUGCa--------UCCCC- -5'
6566 5' -56.4 NC_001847.1 + 32222 0.67 0.868699
Target:  5'- gCCG-GggCgcgGGGCgCCGGACccAGGGGc -3'
miRNA:   3'- -GGCaCaaGa--CCUG-GGCCUGcaUCCCC- -5'
6566 5' -56.4 NC_001847.1 + 84702 0.67 0.868699
Target:  5'- gCCGUccuugUCgcagcgcgGGuuCCCGGcaGCGUAGGGGg -3'
miRNA:   3'- -GGCAca---AGa-------CCu-GGGCC--UGCAUCCCC- -5'
6566 5' -56.4 NC_001847.1 + 135035 0.67 0.868699
Target:  5'- gCCG-GggCgcgGGGCgCCGGACccAGGGGc -3'
miRNA:   3'- -GGCaCaaGa--CCUG-GGCCUGcaUCCCC- -5'
6566 5' -56.4 NC_001847.1 + 37741 0.67 0.861328
Target:  5'- gUCGUGgccaUGGAgaaCCCGGACGUguucucggAGGGc -3'
miRNA:   3'- -GGCACaag-ACCU---GGGCCUGCA--------UCCCc -5'
6566 5' -56.4 NC_001847.1 + 115542 0.67 0.861328
Target:  5'- cCCGaGcUC-GGGCCCGGAuCGgggcggggAGGGGg -3'
miRNA:   3'- -GGCaCaAGaCCUGGGCCU-GCa-------UCCCC- -5'
6566 5' -56.4 NC_001847.1 + 95428 0.67 0.853758
Target:  5'- cUCGUcUUCgcGGcCCUGGACG-AGGGGa -3'
miRNA:   3'- -GGCAcAAGa-CCuGGGCCUGCaUCCCC- -5'
6566 5' -56.4 NC_001847.1 + 10527 0.68 0.838048
Target:  5'- aCGUGUUCUuc-CCCGGGCcc-GGGGa -3'
miRNA:   3'- gGCACAAGAccuGGGCCUGcauCCCC- -5'
6566 5' -56.4 NC_001847.1 + 73134 0.68 0.838048
Target:  5'- gCCGUGcUCgcGGACCUGGAgG-AGGcGGc -3'
miRNA:   3'- -GGCACaAGa-CCUGGGCCUgCaUCC-CC- -5'
6566 5' -56.4 NC_001847.1 + 113340 0.68 0.838047
Target:  5'- aCGUGUUCUuc-CCCGGGCcc-GGGGa -3'
miRNA:   3'- gGCACAAGAccuGGGCCUGcauCCCC- -5'
6566 5' -56.4 NC_001847.1 + 88246 0.68 0.813151
Target:  5'- gCCGgcgcgGcgCgGGGCgCCGGGCGgggacgGGGGGa -3'
miRNA:   3'- -GGCa----CaaGaCCUG-GGCCUGCa-----UCCCC- -5'
6566 5' -56.4 NC_001847.1 + 52434 0.7 0.711404
Target:  5'- gCGUGgagcacaUGGACCUGGACGacUGGGcGGc -3'
miRNA:   3'- gGCACaag----ACCUGGGCCUGC--AUCC-CC- -5'
6566 5' -56.4 NC_001847.1 + 17999 0.7 0.711404
Target:  5'- gCGUagcgUCgGGGCUguUGGGCGUGGGGGg -3'
miRNA:   3'- gGCAca--AGaCCUGG--GCCUGCAUCCCC- -5'
6566 5' -56.4 NC_001847.1 + 37849 0.7 0.711404
Target:  5'- gCCGUGUcaUC-GGACCUaaacuCGUGGGGGg -3'
miRNA:   3'- -GGCACA--AGaCCUGGGccu--GCAUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.