miRNA display CGI


Results 21 - 40 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 3848 0.77 0.068435
Target:  5'- gCGcCGCCCCAGaCGUagacGGCGCcGGGGCUGc -3'
miRNA:   3'- -GC-GCGGGGUC-GCA----CCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3896 0.7 0.209528
Target:  5'- gGCGCCgCGGCGUagccaGCGC-GGGcGCCGg -3'
miRNA:   3'- gCGCGGgGUCGCAc----CGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 3954 0.69 0.240373
Target:  5'- gCGCGaCCCaCAGCGccaGCGCgagGuGGGCCGu -3'
miRNA:   3'- -GCGC-GGG-GUCGCac-CGCGa--C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3959 0.8 0.038177
Target:  5'- gGCGCCgucuCCGGCGgcgagGGCGCcgGGGGCCGg -3'
miRNA:   3'- gCGCGG----GGUCGCa----CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3997 0.7 0.224501
Target:  5'- gCGCgGCCCC-GCGgGGCGCcGGGcCCGg -3'
miRNA:   3'- -GCG-CGGGGuCGCaCCGCGaCCCcGGC- -5'
6567 3' -67.3 NC_001847.1 + 4476 0.66 0.393893
Target:  5'- gGCGCCCCccGCGUcccuGGCGCcGGcguccucGCCGa -3'
miRNA:   3'- gCGCGGGGu-CGCA----CCGCGaCCc------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 4650 0.66 0.401855
Target:  5'- gCGCGCCUCAGCccgacGCGCcGcgucgagcaGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGcac--CGCGaC---------CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 4966 0.71 0.169693
Target:  5'- gCGCGCgCCGGgGgGGCaGCUGGGGUgCGg -3'
miRNA:   3'- -GCGCGgGGUCgCaCCG-CGACCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 5436 0.66 0.378281
Target:  5'- uCGCucCCCCuGCGUguugcccgacGGCGgUGGcGGCCGc -3'
miRNA:   3'- -GCGc-GGGGuCGCA----------CCGCgACC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 5873 0.67 0.333996
Target:  5'- gGUGgUCCAGCGcUGcGCGCagGGcGGCCGc -3'
miRNA:   3'- gCGCgGGGUCGC-AC-CGCGa-CC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 6342 0.68 0.300084
Target:  5'- gGUGCCCCGGCGgcaaccGCGCcGcGGGCg- -3'
miRNA:   3'- gCGCGGGGUCGCac----CGCGaC-CCCGgc -5'
6567 3' -67.3 NC_001847.1 + 7200 0.67 0.351244
Target:  5'- gCGCGUCCUcgAGCGcggcugggccguccaUGGCGCUGcagcGGCUGg -3'
miRNA:   3'- -GCGCGGGG--UCGC---------------ACCGCGACc---CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 7251 0.66 0.401855
Target:  5'- gGUGgCUguGCG-GGCGCggcgGGGGCaCGc -3'
miRNA:   3'- gCGCgGGguCGCaCCGCGa---CCCCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 8107 0.73 0.121117
Target:  5'- aCGCGgCgCCAGCGcaGGCGC-GGGGCCc -3'
miRNA:   3'- -GCGCgG-GGUCGCa-CCGCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 8467 0.67 0.320103
Target:  5'- gGCGCCgggCCGGgGgcGGCGCUcggccgggggcGGGGCCc -3'
miRNA:   3'- gCGCGG---GGUCgCa-CCGCGA-----------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 9540 0.67 0.320103
Target:  5'- aGCGUCCguGCGUGcgccaGCGCUGcaGCCGu -3'
miRNA:   3'- gCGCGGGguCGCAC-----CGCGACccCGGC- -5'
6567 3' -67.3 NC_001847.1 + 10553 0.68 0.281046
Target:  5'- cCGCGCCcggCCGGCGccgggcccGGCGCcGGcGGCCc -3'
miRNA:   3'- -GCGCGG---GGUCGCa-------CCGCGaCC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 10617 0.69 0.245868
Target:  5'- cCGCGCCCU-GC-UGGCGCUGGuccuccGGCUc -3'
miRNA:   3'- -GCGCGGGGuCGcACCGCGACC------CCGGc -5'
6567 3' -67.3 NC_001847.1 + 10725 0.72 0.15061
Target:  5'- aGCGCCgCCAGCGaguuuaggGGgGC-GGGGCCc -3'
miRNA:   3'- gCGCGG-GGUCGCa-------CCgCGaCCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 11156 0.67 0.348326
Target:  5'- gGCgGCUaaacuaCCGGCGUcGGgaGCUGGGGCUGc -3'
miRNA:   3'- gCG-CGG------GGUCGCA-CCg-CGACCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.