miRNA display CGI


Results 1 - 20 of 411 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 121 0.72 0.15061
Target:  5'- cCGCGCCCCGGCcccgcccgcgGGCcucgggccccgGCcggGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGca--------CCG-----------CGa--CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 203 0.67 0.31332
Target:  5'- -cCGCCCCcGCccccGGCGCccgGGGGCCc -3'
miRNA:   3'- gcGCGGGGuCGca--CCGCGa--CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 243 0.75 0.101988
Target:  5'- uCGCGCCCCGacGCccGGCGCccaGGGGCCc -3'
miRNA:   3'- -GCGCGGGGU--CGcaCCGCGa--CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 875 0.7 0.214421
Target:  5'- aCGCGCggCGGCGgcccGCGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGggGUCGCac--CGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 1076 0.69 0.262979
Target:  5'- cCGCGUCCCAGUccacgccgGGCGCcGcGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCGca------CCGCGaCcCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 1273 0.7 0.209528
Target:  5'- aGC-CCCCAGCGguuggcGGCGC-GGuGGCUGg -3'
miRNA:   3'- gCGcGGGGUCGCa-----CCGCGaCC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 1524 0.68 0.281046
Target:  5'- gGCgGCCUCGGCGcgcgcgaaGGCGCccGGGCCGa -3'
miRNA:   3'- gCG-CGGGGUCGCa-------CCGCGacCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 1582 0.7 0.20003
Target:  5'- gCGCGCgCCAGCGcGcCGCUcGGGCCa -3'
miRNA:   3'- -GCGCGgGGUCGCaCcGCGAcCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 2086 0.7 0.219411
Target:  5'- aGCGCCCC-GCGgggcccGCGCggcgGcGGGCCGc -3'
miRNA:   3'- gCGCGGGGuCGCac----CGCGa---C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 2222 0.7 0.20003
Target:  5'- --gGCCgCCAGCGccgcGGCGCUGGGcGCgGg -3'
miRNA:   3'- gcgCGG-GGUCGCa---CCGCGACCC-CGgC- -5'
6567 3' -67.3 NC_001847.1 + 2745 0.67 0.31332
Target:  5'- gGC-CCCCGGCccGGCGCgGcGGcGCCGg -3'
miRNA:   3'- gCGcGGGGUCGcaCCGCGaC-CC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 2856 0.66 0.401855
Target:  5'- gCGCGCgCCAGCGcccaGGCcgacGC-GcGGGCCGc -3'
miRNA:   3'- -GCGCGgGGUCGCa---CCG----CGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 2930 0.69 0.234981
Target:  5'- cCGCGCCgCCAGCGcGGCcgccuccaGCgcGGcGGCCGc -3'
miRNA:   3'- -GCGCGG-GGUCGCaCCG--------CGa-CC-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 2979 0.74 0.109811
Target:  5'- aGCGCCgCCGGgGccGGCGCUGGaGCCGc -3'
miRNA:   3'- gCGCGG-GGUCgCa-CCGCGACCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3071 0.72 0.165711
Target:  5'- uGCGCCgCCAGCGcguccGGCGCgcaGGccgcGGCCGg -3'
miRNA:   3'- gCGCGG-GGUCGCa----CCGCGa--CC----CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3138 0.66 0.386035
Target:  5'- cCGgGagCCCGGCGgcgccggcGGCGCgGcGGGCCGc -3'
miRNA:   3'- -GCgCg-GGGUCGCa-------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3241 0.69 0.245314
Target:  5'- cCGCGCCgugcucgCCGGCGgcaggGGCGCcGGcGCCGc -3'
miRNA:   3'- -GCGCGG-------GGUCGCa----CCGCGaCCcCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3296 0.67 0.333996
Target:  5'- gCGCGCagCUCGGCGagcgcGGCGC-GGGcGCCGc -3'
miRNA:   3'- -GCGCG--GGGUCGCa----CCGCGaCCC-CGGC- -5'
6567 3' -67.3 NC_001847.1 + 3724 0.66 0.378281
Target:  5'- gCGCGCgCCGGCcacGGCGCgcacGcGGCCGu -3'
miRNA:   3'- -GCGCGgGGUCGca-CCGCGac--C-CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3806 0.69 0.262979
Target:  5'- aCGCGgCCgGGCGgcggcgGcGCGCUGccGGGCCa -3'
miRNA:   3'- -GCGCgGGgUCGCa-----C-CGCGAC--CCCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.