Results 1 - 20 of 411 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 3' | -67.3 | NC_001847.1 | + | 43588 | 1.08 | 0.000305 |
Target: 5'- gCGCGCCCCAGCGUGGCGCUGGGGCCGg -3' miRNA: 3'- -GCGCGGGGUCGCACCGCGACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 103056 | 0.75 | 0.101988 |
Target: 5'- uCGCGCCCCGacGCccGGCGCccaGGGGCCc -3' miRNA: 3'- -GCGCGGGGU--CGcaCCGCGa--CCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 66326 | 0.74 | 0.104536 |
Target: 5'- gGCGCCCUgcGGCGgguggGGCGC-GGGcGCCGc -3' miRNA: 3'- gCGCGGGG--UCGCa----CCGCGaCCC-CGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 135000 | 0.66 | 0.401855 |
Target: 5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3' miRNA: 3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 69543 | 0.79 | 0.051565 |
Target: 5'- uCGCGCCCCGGgCGUGGaUGCgcgugugccuggGGGGCCa -3' miRNA: 3'- -GCGCGGGGUC-GCACC-GCGa-----------CCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 107779 | 0.79 | 0.051827 |
Target: 5'- gCGCGCCCgGGgG-GGCaGCUGGGGCUGc -3' miRNA: 3'- -GCGCGGGgUCgCaCCG-CGACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 122849 | 0.78 | 0.058825 |
Target: 5'- cCGCGCCCUGGCuuGUGGUGCUGGuGGgCGc -3' miRNA: 3'- -GCGCGGGGUCG--CACCGCGACC-CCgGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 30160 | 0.77 | 0.068263 |
Target: 5'- uGCGCCCUggguGCGUGGCGCUcGGcggaccuGGCCGa -3' miRNA: 3'- gCGCGGGGu---CGCACCGCGA-CC-------CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 64448 | 0.76 | 0.079547 |
Target: 5'- gGCGCCCCcgccgccgcccGCGgcGGCGCggGGGGCCGa -3' miRNA: 3'- gCGCGGGGu----------CGCa-CCGCGa-CCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 133807 | 0.75 | 0.092373 |
Target: 5'- cCGCGCag-GGCGcGGCGCUGGGGCuCGg -3' miRNA: 3'- -GCGCGgggUCGCaCCGCGACCCCG-GC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 87670 | 0.76 | 0.085732 |
Target: 5'- uGCGCCgCauGGCccgGGCGCUGGGGCUGc -3' miRNA: 3'- gCGCGGgG--UCGca-CCGCGACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 29427 | 0.76 | 0.073791 |
Target: 5'- uGCGCgCCAGCGa-GCGCUGGGGCg- -3' miRNA: 3'- gCGCGgGGUCGCacCGCGACCCCGgc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 36007 | 0.81 | 0.031912 |
Target: 5'- gGCgGCCgCgGGCGUGGUGCUGGGGCUGc -3' miRNA: 3'- gCG-CGG-GgUCGCACCGCGACCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 106772 | 0.76 | 0.085732 |
Target: 5'- gGCGCCgucuCCGGCGcgagGGCGCcgGGGGCCc -3' miRNA: 3'- gCGCGG----GGUCGCa---CCGCGa-CCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 24170 | 0.8 | 0.043818 |
Target: 5'- gCGCGCagccguacucgcaCAGCGUGGCGCUGGuGGCCa -3' miRNA: 3'- -GCGCGgg-----------GUCGCACCGCGACC-CCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 3848 | 0.77 | 0.068435 |
Target: 5'- gCGcCGCCCCAGaCGUagacGGCGCcGGGGCUGc -3' miRNA: 3'- -GC-GCGGGGUC-GCA----CCGCGaCCCCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 78669 | 0.75 | 0.090107 |
Target: 5'- uGCGUCgCCGGCGUgcgcacgcgGGCGCUGGuGCCGg -3' miRNA: 3'- gCGCGG-GGUCGCA---------CCGCGACCcCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 134009 | 0.74 | 0.104278 |
Target: 5'- gCGCGCCgaGGCGccgccgcUGGUGCUGGaGGCCGc -3' miRNA: 3'- -GCGCGGggUCGC-------ACCGCGACC-CCGGC- -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 35619 | 0.79 | 0.044493 |
Target: 5'- aCGcCGCCgCCGGC--GGCGCUGGGGCCa -3' miRNA: 3'- -GC-GCGG-GGUCGcaCCGCGACCCCGGc -5' |
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6567 | 3' | -67.3 | NC_001847.1 | + | 132917 | 0.78 | 0.054523 |
Target: 5'- cCGCG-CCCAGCGccgcGGCGCUGGcGGCCu -3' miRNA: 3'- -GCGCgGGGUCGCa---CCGCGACC-CCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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