miRNA display CGI


Results 1 - 20 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 43588 1.08 0.000305
Target:  5'- gCGCGCCCCAGCGUGGCGCUGGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGCACCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 36007 0.81 0.031912
Target:  5'- gGCgGCCgCgGGCGUGGUGCUGGGGCUGc -3'
miRNA:   3'- gCG-CGG-GgUCGCACCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3959 0.8 0.038177
Target:  5'- gGCGCCgucuCCGGCGgcgagGGCGCcgGGGGCCGg -3'
miRNA:   3'- gCGCGG----GGUCGCa----CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 95553 0.8 0.043374
Target:  5'- cCGCGCCgCAGCa--GCGCUGGGGCCa -3'
miRNA:   3'- -GCGCGGgGUCGcacCGCGACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 24170 0.8 0.043818
Target:  5'- gCGCGCagccguacucgcaCAGCGUGGCGCUGGuGGCCa -3'
miRNA:   3'- -GCGCGgg-----------GUCGCACCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 35619 0.79 0.044493
Target:  5'- aCGcCGCCgCCGGC--GGCGCUGGGGCCa -3'
miRNA:   3'- -GC-GCGG-GGUCGcaCCGCGACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 69543 0.79 0.051565
Target:  5'- uCGCGCCCCGGgCGUGGaUGCgcgugugccuggGGGGCCa -3'
miRNA:   3'- -GCGCGGGGUC-GCACC-GCGa-----------CCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 107779 0.79 0.051827
Target:  5'- gCGCGCCCgGGgG-GGCaGCUGGGGCUGc -3'
miRNA:   3'- -GCGCGGGgUCgCaCCG-CGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30104 0.78 0.054523
Target:  5'- cCGCG-CCCAGCGccgcGGCGCUGGcGGCCu -3'
miRNA:   3'- -GCGCgGGGUCGCa---CCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 132917 0.78 0.054523
Target:  5'- cCGCG-CCCAGCGccgcGGCGCUGGcGGCCu -3'
miRNA:   3'- -GCGCgGGGUCGCa---CCGCGACC-CCGGc -5'
6567 3' -67.3 NC_001847.1 + 122849 0.78 0.058825
Target:  5'- cCGCGCCCUGGCuuGUGGUGCUGGuGGgCGc -3'
miRNA:   3'- -GCGCGGGGUCG--CACCGCGACC-CCgGC- -5'
6567 3' -67.3 NC_001847.1 + 96770 0.77 0.065075
Target:  5'- gGUGCCagugCCGGUGccGGCGCUGGGGCUGa -3'
miRNA:   3'- gCGCGG----GGUCGCa-CCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 30160 0.77 0.068263
Target:  5'- uGCGCCCUggguGCGUGGCGCUcGGcggaccuGGCCGa -3'
miRNA:   3'- gCGCGGGGu---CGCACCGCGA-CC-------CCGGC- -5'
6567 3' -67.3 NC_001847.1 + 3848 0.77 0.068435
Target:  5'- gCGcCGCCCCAGaCGUagacGGCGCcGGGGCUGc -3'
miRNA:   3'- -GC-GCGGGGUC-GCA----CCGCGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29427 0.76 0.073791
Target:  5'- uGCGCgCCAGCGa-GCGCUGGGGCg- -3'
miRNA:   3'- gCGCGgGGUCGCacCGCGACCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 64448 0.76 0.079547
Target:  5'- gGCGCCCCcgccgccgcccGCGgcGGCGCggGGGGCCGa -3'
miRNA:   3'- gCGCGGGGu----------CGCa-CCGCGa-CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 104369 0.76 0.079547
Target:  5'- cCGCGCCCgCAgacGCGcGGCGCUGcagcGGGCCGc -3'
miRNA:   3'- -GCGCGGG-GU---CGCaCCGCGAC----CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 14557 0.76 0.08156
Target:  5'- cCGCGCCgCAGCGcgGGUGCUGGcGGgCGc -3'
miRNA:   3'- -GCGCGGgGUCGCa-CCGCGACC-CCgGC- -5'
6567 3' -67.3 NC_001847.1 + 87670 0.76 0.085732
Target:  5'- uGCGCCgCauGGCccgGGCGCUGGGGCUGc -3'
miRNA:   3'- gCGCGGgG--UCGca-CCGCGACCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 106772 0.76 0.085732
Target:  5'- gGCGCCgucuCCGGCGcgagGGCGCcgGGGGCCc -3'
miRNA:   3'- gCGCGG----GGUCGCa---CCGCGa-CCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.