miRNA display CGI


Results 1 - 20 of 411 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 3' -67.3 NC_001847.1 + 52136 0.65 0.407488
Target:  5'- gGCGCCCCAGCGgaccgacgaggccgUGGC-CaGGcuccGCCGg -3'
miRNA:   3'- gCGCGGGGUCGC--------------ACCGcGaCCc---CGGC- -5'
6567 3' -67.3 NC_001847.1 + 60801 0.66 0.393893
Target:  5'- gCGCGCCaCCAGCGcGcGCGCcUGcGGCa- -3'
miRNA:   3'- -GCGCGG-GGUCGCaC-CGCG-ACcCCGgc -5'
6567 3' -67.3 NC_001847.1 + 4476 0.66 0.393893
Target:  5'- gGCGCCCCccGCGUcccuGGCGCcGGcguccucGCCGa -3'
miRNA:   3'- gCGCGGGGu-CGCA----CCGCGaCCc------CGGC- -5'
6567 3' -67.3 NC_001847.1 + 39835 0.66 0.393893
Target:  5'- aGCGCuUCCuGCGUGGCGCgcgccaGCCGc -3'
miRNA:   3'- gCGCG-GGGuCGCACCGCGaccc--CGGC- -5'
6567 3' -67.3 NC_001847.1 + 75830 0.66 0.393103
Target:  5'- gGCGCCgCCGGCGccgcgccUGGCaccCUGGGuaCGg -3'
miRNA:   3'- gCGCGG-GGUCGC-------ACCGc--GACCCcgGC- -5'
6567 3' -67.3 NC_001847.1 + 108620 0.66 0.389166
Target:  5'- aCGUGCUCCGGgGgacggcgGGCgacgcugcagaagugGCcGGGGCCGc -3'
miRNA:   3'- -GCGCGGGGUCgCa------CCG---------------CGaCCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 51558 0.66 0.386035
Target:  5'- gGCGCagcucgCCAGCGcuuccgcGGCGCcGGGGCa- -3'
miRNA:   3'- gCGCGg-----GGUCGCa------CCGCGaCCCCGgc -5'
6567 3' -67.3 NC_001847.1 + 31249 0.66 0.386035
Target:  5'- cCGCgGCgCCCGGCGUGGa-CUGGGacGCgGa -3'
miRNA:   3'- -GCG-CG-GGGUCGCACCgcGACCC--CGgC- -5'
6567 3' -67.3 NC_001847.1 + 3138 0.66 0.386035
Target:  5'- cCGgGagCCCGGCGgcgccggcGGCGCgGcGGGCCGc -3'
miRNA:   3'- -GCgCg-GGGUCGCa-------CCGCGaC-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 29394 0.66 0.393893
Target:  5'- cCGCGCUggaGGCGgccGCGCUGGcGGCgCGg -3'
miRNA:   3'- -GCGCGGgg-UCGCac-CGCGACC-CCG-GC- -5'
6567 3' -67.3 NC_001847.1 + 31727 0.66 0.393893
Target:  5'- gCGCGCCgCuGCGgagcGGcCGCgGaGGGCCa -3'
miRNA:   3'- -GCGCGGgGuCGCa---CC-GCGaC-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 116389 0.66 0.393893
Target:  5'- cCGCcuuaGCCgCGGCGgcGGCGCUcuGGGCCc -3'
miRNA:   3'- -GCG----CGGgGUCGCa-CCGCGAc-CCCGGc -5'
6567 3' -67.3 NC_001847.1 + 135000 0.66 0.401855
Target:  5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3'
miRNA:   3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 32187 0.66 0.401855
Target:  5'- gGCcCCCCGGCcggGGCccgaggcccGCgggcGGGGCCGg -3'
miRNA:   3'- gCGcGGGGUCGca-CCG---------CGa---CCCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 46509 0.66 0.401855
Target:  5'- aGCGUUgCCAGCGgcaGCGCUcgGGGGgCGg -3'
miRNA:   3'- gCGCGG-GGUCGCac-CGCGA--CCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 45856 0.66 0.401855
Target:  5'- uCGCGCUCUucgccGCcggGGUucaGCUGGGGCCc -3'
miRNA:   3'- -GCGCGGGGu----CGca-CCG---CGACCCCGGc -5'
6567 3' -67.3 NC_001847.1 + 37324 0.66 0.401855
Target:  5'- gCGCGCCgagcaCAGCGcUGGCGUgcggucaugcgGcGGGUCGa -3'
miRNA:   3'- -GCGCGGg----GUCGC-ACCGCGa----------C-CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 37034 0.66 0.401855
Target:  5'- gGCGCCgggcucgcacuCUAGCcUGG-GCUGGGGgCGg -3'
miRNA:   3'- gCGCGG-----------GGUCGcACCgCGACCCCgGC- -5'
6567 3' -67.3 NC_001847.1 + 4650 0.66 0.401855
Target:  5'- gCGCGCCUCAGCccgacGCGCcGcgucgagcaGGGCCGg -3'
miRNA:   3'- -GCGCGGGGUCGcac--CGCGaC---------CCCGGC- -5'
6567 3' -67.3 NC_001847.1 + 2856 0.66 0.401855
Target:  5'- gCGCGCgCCAGCGcccaGGCcgacGC-GcGGGCCGc -3'
miRNA:   3'- -GCGCGgGGUCGCa---CCG----CGaC-CCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.