miRNA display CGI


Results 41 - 60 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 56186 0.66 0.931421
Target:  5'- --aGGCUgcgCGAGCGCcagccUGCGGGGCa -3'
miRNA:   3'- gugCCGGga-GUUCGUGua---AUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 117597 0.66 0.931421
Target:  5'- aACGGCUCgaUCGcguaccguAGCGCGgaGCuGGGCg -3'
miRNA:   3'- gUGCCGGG--AGU--------UCGUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 97843 0.66 0.931421
Target:  5'- aCACGGCU----AGCACGUcggACGGGGa -3'
miRNA:   3'- -GUGCCGGgaguUCGUGUAa--UGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 119098 0.66 0.931421
Target:  5'- cCGCGGCCgCcgCGGG-GCG--GCGGGGCa -3'
miRNA:   3'- -GUGCCGG-Ga-GUUCgUGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 119158 0.66 0.931421
Target:  5'- cCGCGGCCgCcgCGGG-GCG--GCGGGGCa -3'
miRNA:   3'- -GUGCCGG-Ga-GUUCgUGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 20030 0.66 0.931421
Target:  5'- gGCGGCCCUgcGGC-CGccGCccuGGGCg -3'
miRNA:   3'- gUGCCGGGAguUCGuGUaaUGu--CCCG- -5'
6567 5' -54.1 NC_001847.1 + 56131 0.66 0.931421
Target:  5'- aCACGGCgCU-GGGCuCG--GCGGGGCu -3'
miRNA:   3'- -GUGCCGgGAgUUCGuGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 12583 0.66 0.930894
Target:  5'- aCGCGgcGCCCUCGcacucgugcggccAGCGaccgGCAGGGUc -3'
miRNA:   3'- -GUGC--CGGGAGU-------------UCGUguaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 78299 0.66 0.92604
Target:  5'- gGCGGUgCUCGGGCG----GCuGGGCc -3'
miRNA:   3'- gUGCCGgGAGUUCGUguaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 55888 0.66 0.92604
Target:  5'- cCGCGGCCCgacgCcGGCuaGCAgcuCGGGGa -3'
miRNA:   3'- -GUGCCGGGa---GuUCG--UGUaauGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 124450 0.66 0.92604
Target:  5'- gCGCGGgCCgcgccCGGGCGCGaccGgAGGGCg -3'
miRNA:   3'- -GUGCCgGGa----GUUCGUGUaa-UgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 30657 0.66 0.92604
Target:  5'- gGCGGUgCU--GGCGCuGUUGgAGGGCu -3'
miRNA:   3'- gUGCCGgGAguUCGUG-UAAUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 57655 0.66 0.92604
Target:  5'- cCugGGCgCCgUCGggcaggcggugGGCACGguggUGCuGGGCg -3'
miRNA:   3'- -GugCCG-GG-AGU-----------UCGUGUa---AUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 30041 0.66 0.92604
Target:  5'- cCGCGGCCg-UggGCgACGUUGCcGGcGCg -3'
miRNA:   3'- -GUGCCGGgaGuuCG-UGUAAUGuCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 99356 0.66 0.92604
Target:  5'- cCGCGGUCgUCGAugcGCGCcgUuaGCGGGuGCg -3'
miRNA:   3'- -GUGCCGGgAGUU---CGUGuaA--UGUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 19423 0.66 0.92604
Target:  5'- aGCGcGCCCguggcggCAAGCGC---ACAcGGGCc -3'
miRNA:   3'- gUGC-CGGGa------GUUCGUGuaaUGU-CCCG- -5'
6567 5' -54.1 NC_001847.1 + 70991 0.66 0.92604
Target:  5'- aGCGGCCUgcauggCGGGcCGCAUguccagUACGGcGGCc -3'
miRNA:   3'- gUGCCGGGa-----GUUC-GUGUA------AUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 45230 0.66 0.92604
Target:  5'- gCGCGG-CCUCGcgcGGCACA--ACcucGGGCg -3'
miRNA:   3'- -GUGCCgGGAGU---UCGUGUaaUGu--CCCG- -5'
6567 5' -54.1 NC_001847.1 + 21637 0.66 0.92604
Target:  5'- gCGCGGgCCgcgccCGGGCGCGaccGgAGGGCg -3'
miRNA:   3'- -GUGCCgGGa----GUUCGUGUaa-UgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 116544 0.66 0.92604
Target:  5'- aACGGCCC--AGGCgACGUgUGCcuGGGCg -3'
miRNA:   3'- gUGCCGGGagUUCG-UGUA-AUGu-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.