miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 25353 0.66 0.93853
Target:  5'- cCAC-GCCggCAAGCugAUggcagggggcggcgGCAGGGCg -3'
miRNA:   3'- -GUGcCGGgaGUUCGugUAa-------------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 31220 0.66 0.936549
Target:  5'- gCGCGGCgU--GGGCGCGcgaaaGCGGGGCg -3'
miRNA:   3'- -GUGCCGgGagUUCGUGUaa---UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 129700 0.66 0.936549
Target:  5'- cCACcGCCgUCGGGCAacacGCAGGGg -3'
miRNA:   3'- -GUGcCGGgAGUUCGUguaaUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 5011 0.66 0.936549
Target:  5'- uGCGccucGCCCUCGcGCGCG----AGGGCg -3'
miRNA:   3'- gUGC----CGGGAGUuCGUGUaaugUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 9722 0.66 0.936549
Target:  5'- gCGCgGGUCCUCcGGCGgCGc--CGGGGCa -3'
miRNA:   3'- -GUG-CCGGGAGuUCGU-GUaauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 26887 0.66 0.936549
Target:  5'- cCACcGCCgUCGGGCAacacGCAGGGg -3'
miRNA:   3'- -GUGcCGGgAGUUCGUguaaUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 120137 0.66 0.936549
Target:  5'- gCGCGGCCC-CAc-CGCGgccgaGGGGCg -3'
miRNA:   3'- -GUGCCGGGaGUucGUGUaaug-UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 75922 0.66 0.936549
Target:  5'- gACGGCCgacgcgugCAAGCGCAcgGCGcggacggcucGGGCu -3'
miRNA:   3'- gUGCCGGga------GUUCGUGUaaUGU----------CCCG- -5'
6567 5' -54.1 NC_001847.1 + 13261 0.66 0.936549
Target:  5'- gGCGGUUCgcaggCAGGcCGCGUc-CAGGGCc -3'
miRNA:   3'- gUGCCGGGa----GUUC-GUGUAauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 27905 0.66 0.936549
Target:  5'- -cCGGCCCggccGCGC-UUGCGGaGGCc -3'
miRNA:   3'- guGCCGGGaguuCGUGuAAUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 2991 0.66 0.935037
Target:  5'- uCGCGGCCC-CAcccuGCGCGgcaGCagcgccgcccaauaGGGGCg -3'
miRNA:   3'- -GUGCCGGGaGUu---CGUGUaa-UG--------------UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 52118 0.66 0.931421
Target:  5'- aCGCGGCCCgc-GGUAg--UGCuGGGCc -3'
miRNA:   3'- -GUGCCGGGaguUCGUguaAUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 56131 0.66 0.931421
Target:  5'- aCACGGCgCU-GGGCuCG--GCGGGGCu -3'
miRNA:   3'- -GUGCCGgGAgUUCGuGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 20169 0.66 0.931421
Target:  5'- -uCGGCgCUCAGGCA----ACGGGcGCg -3'
miRNA:   3'- guGCCGgGAGUUCGUguaaUGUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 77246 0.66 0.931421
Target:  5'- gCGCGGUCgCgCGGGCGCug-GC-GGGCg -3'
miRNA:   3'- -GUGCCGG-GaGUUCGUGuaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 36378 0.66 0.931421
Target:  5'- cCGCGGCCCgggCAGcGCGCGccGCGGcgacGGUg -3'
miRNA:   3'- -GUGCCGGGa--GUU-CGUGUaaUGUC----CCG- -5'
6567 5' -54.1 NC_001847.1 + 119098 0.66 0.931421
Target:  5'- cCGCGGCCgCcgCGGG-GCG--GCGGGGCa -3'
miRNA:   3'- -GUGCCGG-Ga-GUUCgUGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 119158 0.66 0.931421
Target:  5'- cCGCGGCCgCcgCGGG-GCG--GCGGGGCa -3'
miRNA:   3'- -GUGCCGG-Ga-GUUCgUGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 56186 0.66 0.931421
Target:  5'- --aGGCUgcgCGAGCGCcagccUGCGGGGCa -3'
miRNA:   3'- gugCCGGga-GUUCGUGua---AUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 97843 0.66 0.931421
Target:  5'- aCACGGCU----AGCACGUcggACGGGGa -3'
miRNA:   3'- -GUGCCGGgaguUCGUGUAa--UGUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.