miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 7199 0.76 0.426573
Target:  5'- aGCGcGUCCUCGAGCGCG--GCuGGGCc -3'
miRNA:   3'- gUGC-CGGGAGUUCGUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 7717 0.74 0.533105
Target:  5'- cUugGGCaUUCAGGCGCAggGCGcGGGCg -3'
miRNA:   3'- -GugCCGgGAGUUCGUGUaaUGU-CCCG- -5'
6567 5' -54.1 NC_001847.1 + 8061 0.74 0.533105
Target:  5'- gCGCGGCCCgc--GCGCAgaGgGGGGCa -3'
miRNA:   3'- -GUGCCGGGaguuCGUGUaaUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 8107 0.75 0.512918
Target:  5'- aCGCGGCgCCagcgCAGGCGCGggGCcccaGGGGCg -3'
miRNA:   3'- -GUGCCG-GGa---GUUCGUGUaaUG----UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 8479 0.69 0.798456
Target:  5'- -cCGGCguCCUCGu-CGCGUUugGGGGCg -3'
miRNA:   3'- guGCCG--GGAGUucGUGUAAugUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 8481 0.7 0.770095
Target:  5'- gGCGGCgCUC-GGC-CGgggGCGGGGCc -3'
miRNA:   3'- gUGCCGgGAGuUCGuGUaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 8709 0.72 0.647653
Target:  5'- gACGGCCac--GGCugGUggGCGGGGCa -3'
miRNA:   3'- gUGCCGGgaguUCGugUAa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 9584 0.71 0.720363
Target:  5'- cCGCGGCCgcgaUCGAGcCGCAgccGCGGGGa -3'
miRNA:   3'- -GUGCCGGg---AGUUC-GUGUaa-UGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 9722 0.68 0.866465
Target:  5'- gCGCGGCCaCUCGcuuGcCACGcgACcGGGCg -3'
miRNA:   3'- -GUGCCGG-GAGUu--C-GUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 9722 0.66 0.936549
Target:  5'- gCGCgGGUCCUCcGGCGgCGc--CGGGGCa -3'
miRNA:   3'- -GUG-CCGGGAGuUCGU-GUaauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 10706 0.72 0.683247
Target:  5'- gCGCGGCCCgcgccggcCAAGCGCcgccagcgaguuuagGgggGCGGGGCc -3'
miRNA:   3'- -GUGCCGGGa-------GUUCGUG---------------Uaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 11586 0.68 0.866465
Target:  5'- gGCGGCCCcggccCAAGCccCGUUcGCAGcGGCc -3'
miRNA:   3'- gUGCCGGGa----GUUCGu-GUAA-UGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 12150 0.67 0.908386
Target:  5'- aGCGGCUCguuggucggCAAGCugGUgUAUAcGGGCc -3'
miRNA:   3'- gUGCCGGGa--------GUUCGugUA-AUGU-CCCG- -5'
6567 5' -54.1 NC_001847.1 + 12583 0.66 0.930894
Target:  5'- aCGCGgcGCCCUCGcacucgugcggccAGCGaccgGCAGGGUc -3'
miRNA:   3'- -GUGC--CGGGAGU-------------UCGUguaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 13261 0.66 0.936549
Target:  5'- gGCGGUUCgcaggCAGGcCGCGUc-CAGGGCc -3'
miRNA:   3'- gUGCCGGGa----GUUC-GUGUAauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 13285 0.72 0.668632
Target:  5'- -cCGGCCCUguGcGCGCGcUACGcGGGCg -3'
miRNA:   3'- guGCCGGGAguU-CGUGUaAUGU-CCCG- -5'
6567 5' -54.1 NC_001847.1 + 13604 0.68 0.849841
Target:  5'- --aGGCCCUgGcuuuuagcgcgcuGGCACAUguuUACGGGGa -3'
miRNA:   3'- gugCCGGGAgU-------------UCGUGUA---AUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 13731 0.68 0.850654
Target:  5'- aGCGGCCUUCcuGgGCGU---GGGGCu -3'
miRNA:   3'- gUGCCGGGAGuuCgUGUAaugUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 14076 0.68 0.874039
Target:  5'- cUugGGCCgCUCGuGgACAUcGCGGaGGCg -3'
miRNA:   3'- -GugCCGG-GAGUuCgUGUAaUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 14171 0.69 0.802135
Target:  5'- gGCGGCCgCgcuaaAGGCACGggaggggcuggcgGCGGGGCu -3'
miRNA:   3'- gUGCCGG-Gag---UUCGUGUaa-----------UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.