miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 8061 0.74 0.533105
Target:  5'- gCGCGGCCCgc--GCGCAgaGgGGGGCa -3'
miRNA:   3'- -GUGCCGGGaguuCGUGUaaUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 47720 0.74 0.533105
Target:  5'- aGCaGCuCUUCGAGCGCGgcggGCGGGGCc -3'
miRNA:   3'- gUGcCG-GGAGUUCGUGUaa--UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 30233 0.74 0.543306
Target:  5'- uCGCGGCCCgccgccGCGCGggccccGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGaguu--CGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 133046 0.74 0.543306
Target:  5'- uCGCGGCCCgccgccGCGCGggccccGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGaguu--CGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 123872 0.74 0.553571
Target:  5'- -cCGGCCCUgAGGCcCugggGCGGGGCc -3'
miRNA:   3'- guGCCGGGAgUUCGuGuaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 119534 0.74 0.553571
Target:  5'- cCGCGGCCggCAGGCugGgcaaGGGGCg -3'
miRNA:   3'- -GUGCCGGgaGUUCGugUaaugUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 21059 0.74 0.553571
Target:  5'- -cCGGCCCUgAGGCcCugggGCGGGGCc -3'
miRNA:   3'- guGCCGGGAgUUCGuGuaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 90166 0.74 0.553571
Target:  5'- gCAUGGCCa---AGCGCAgccUUGCGGGGCu -3'
miRNA:   3'- -GUGCCGGgaguUCGUGU---AAUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 102667 0.74 0.553571
Target:  5'- aGCGGCCg-CGAGgGCGgggggGCGGGGCg -3'
miRNA:   3'- gUGCCGGgaGUUCgUGUaa---UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 108347 0.74 0.563892
Target:  5'- uCACGGCCgUCGucugcGGCGCGcaGgAGGGCg -3'
miRNA:   3'- -GUGCCGGgAGU-----UCGUGUaaUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 122841 0.73 0.595128
Target:  5'- --gGGCCgUCAAGUAgucUUGCGGGGCa -3'
miRNA:   3'- gugCCGGgAGUUCGUgu-AAUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 128536 0.73 0.605608
Target:  5'- gCugGGCCCUucacaCAGGCAaaaGUagggagGCAGGGCc -3'
miRNA:   3'- -GugCCGGGA-----GUUCGUg--UAa-----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 131588 0.73 0.605608
Target:  5'- gGCGcGCCUgcugCAgcGGCGCG-UGCAGGGCu -3'
miRNA:   3'- gUGC-CGGGa---GU--UCGUGUaAUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 25723 0.73 0.605608
Target:  5'- gCugGGCCCUucacaCAGGCAaaaGUagggagGCAGGGCc -3'
miRNA:   3'- -GugCCGGGA-----GUUCGUg--UAa-----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 28775 0.73 0.605608
Target:  5'- gGCGcGCCUgcugCAgcGGCGCG-UGCAGGGCu -3'
miRNA:   3'- gUGC-CGGGa---GU--UCGUGUaAUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 44743 0.73 0.626621
Target:  5'- -gUGGCCCgccaCAAGCACGUacgGCcgGGGGCc -3'
miRNA:   3'- guGCCGGGa---GUUCGUGUAa--UG--UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 3540 0.73 0.626621
Target:  5'- cUACGGCCg-CGAGCGCG--GCGGcGGCg -3'
miRNA:   3'- -GUGCCGGgaGUUCGUGUaaUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 26506 0.73 0.626621
Target:  5'- gGCGGgCCUgcCGGGCGCGggGCcgGGGGCg -3'
miRNA:   3'- gUGCCgGGA--GUUCGUGUaaUG--UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 129319 0.73 0.626621
Target:  5'- gGCGGgCCUgcCGGGCGCGggGCcgGGGGCg -3'
miRNA:   3'- gUGCCgGGA--GUUCGUGUaaUG--UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 114878 0.72 0.636087
Target:  5'- uGCGGCCUUUAaaggauAGCACAUgGCgcgcgcgGGGGCg -3'
miRNA:   3'- gUGCCGGGAGU------UCGUGUAaUG-------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.