miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 43622 1.12 0.002047
Target:  5'- cCACGGCCCUCAAGCACAUUACAGGGCg -3'
miRNA:   3'- -GUGCCGGGAGUUCGUGUAAUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 30497 0.79 0.289685
Target:  5'- gCGCGGCCCUCGGGCGCGcgcuagacgACAGugccGGCg -3'
miRNA:   3'- -GUGCCGGGAGUUCGUGUaa-------UGUC----CCG- -5'
6567 5' -54.1 NC_001847.1 + 15411 0.79 0.30384
Target:  5'- gGCGGCCCUgGAGCGCG--GCAcGGCg -3'
miRNA:   3'- gUGCCGGGAgUUCGUGUaaUGUcCCG- -5'
6567 5' -54.1 NC_001847.1 + 35185 0.77 0.399752
Target:  5'- aCGCGGCCUUCGAggaggagcGCGCGcgGCuGGGCg -3'
miRNA:   3'- -GUGCCGGGAGUU--------CGUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 68054 0.77 0.408573
Target:  5'- aCACGGCggCCUCGcGGCGCGccugcgGCGGGGCg -3'
miRNA:   3'- -GUGCCG--GGAGU-UCGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 7199 0.76 0.426573
Target:  5'- aGCGcGUCCUCGAGCGCG--GCuGGGCc -3'
miRNA:   3'- gUGC-CGGGAGUUCGUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 45115 0.76 0.435748
Target:  5'- --aGGCCCUCgAAGCGCAggUGCAGcucGGCg -3'
miRNA:   3'- gugCCGGGAG-UUCGUGUa-AUGUC---CCG- -5'
6567 5' -54.1 NC_001847.1 + 5862 0.76 0.435748
Target:  5'- -cUGGCCCUCGaggugguccAGCGCugcgcGCAGGGCg -3'
miRNA:   3'- guGCCGGGAGU---------UCGUGuaa--UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 95302 0.76 0.445035
Target:  5'- cCGCuGGCgCCUcCAGGCGCGgcgccgGCAGGGCc -3'
miRNA:   3'- -GUG-CCG-GGA-GUUCGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 55437 0.76 0.454433
Target:  5'- aCGCGGUCCUgCAgcgccuGGCGCcg-GCGGGGCg -3'
miRNA:   3'- -GUGCCGGGA-GU------UCGUGuaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 77098 0.75 0.473544
Target:  5'- gGCGGCCCgc--GCGCGguagcgGCGGGGCu -3'
miRNA:   3'- gUGCCGGGaguuCGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 90551 0.75 0.48325
Target:  5'- gGCGGCCCUCGccGCGC---GCgAGGGCg -3'
miRNA:   3'- gUGCCGGGAGUu-CGUGuaaUG-UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 64154 0.75 0.502941
Target:  5'- uGCGGCCCgccaugCAGGCcgcuuGCGcggACGGGGCg -3'
miRNA:   3'- gUGCCGGGa-----GUUCG-----UGUaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 116054 0.75 0.502941
Target:  5'- gACGGCagCCUCGGGCAC----CGGGGCg -3'
miRNA:   3'- gUGCCG--GGAGUUCGUGuaauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 6688 0.75 0.512918
Target:  5'- gGCGGCCggcCGGGCGCGcgcGCAGGGCc -3'
miRNA:   3'- gUGCCGGga-GUUCGUGUaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 30762 0.75 0.512918
Target:  5'- cCGCGGCCCgcugCAGcgccGCGCGUcUGCGGGcGCg -3'
miRNA:   3'- -GUGCCGGGa---GUU----CGUGUA-AUGUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 8107 0.75 0.512918
Target:  5'- aCGCGGCgCCagcgCAGGCGCGggGCcccaGGGGCg -3'
miRNA:   3'- -GUGCCG-GGa---GUUCGUGUaaUG----UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 17464 0.74 0.519949
Target:  5'- gGCGGCCgUCAgggAGCGCAcggucaggggcaagUUGCGGGGg -3'
miRNA:   3'- gUGCCGGgAGU---UCGUGU--------------AAUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 87887 0.74 0.527018
Target:  5'- gCGCGGCUUUCugggcggggcuuuGCACAgggGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGAGuu-----------CGUGUaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 47720 0.74 0.533105
Target:  5'- aGCaGCuCUUCGAGCGCGgcggGCGGGGCc -3'
miRNA:   3'- gUGcCG-GGAGUUCGUGUaa--UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.