miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 33669 0.65 0.944232
Target:  5'- cCGCGGCCCgcgCGgggcuagaGGCGCAggcgcucgcggcGCGGcGGCg -3'
miRNA:   3'- -GUGCCGGGa--GU--------UCGUGUaa----------UGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 52761 0.65 0.944232
Target:  5'- aGCGGCCCgcccugacCAuugacaugguguAGCGCGgcggcgacauggGCGGGGCu -3'
miRNA:   3'- gUGCCGGGa-------GU------------UCGUGUaa----------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 75922 0.66 0.936549
Target:  5'- gACGGCCgacgcgugCAAGCGCAcgGCGcggacggcucGGGCu -3'
miRNA:   3'- gUGCCGGga------GUUCGUGUaaUGU----------CCCG- -5'
6567 5' -54.1 NC_001847.1 + 13261 0.66 0.936549
Target:  5'- gGCGGUUCgcaggCAGGcCGCGUc-CAGGGCc -3'
miRNA:   3'- gUGCCGGGa----GUUC-GUGUAauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 119158 0.66 0.931421
Target:  5'- cCGCGGCCgCcgCGGG-GCG--GCGGGGCa -3'
miRNA:   3'- -GUGCCGG-Ga-GUUCgUGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 119098 0.66 0.931421
Target:  5'- cCGCGGCCgCcgCGGG-GCG--GCGGGGCa -3'
miRNA:   3'- -GUGCCGG-Ga-GUUCgUGUaaUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 130959 0.66 0.931421
Target:  5'- gCGCGGCCCaCGGGCGCGcggcccaaaACAaGGCc -3'
miRNA:   3'- -GUGCCGGGaGUUCGUGUaa-------UGUcCCG- -5'
6567 5' -54.1 NC_001847.1 + 117597 0.66 0.931421
Target:  5'- aACGGCUCgaUCGcguaccguAGCGCGgaGCuGGGCg -3'
miRNA:   3'- gUGCCGGG--AGU--------UCGUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 56186 0.66 0.931421
Target:  5'- --aGGCUgcgCGAGCGCcagccUGCGGGGCa -3'
miRNA:   3'- gugCCGGga-GUUCGUGua---AUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 97843 0.66 0.931421
Target:  5'- aCACGGCU----AGCACGUcggACGGGGa -3'
miRNA:   3'- -GUGCCGGgaguUCGUGUAa--UGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 26887 0.66 0.936549
Target:  5'- cCACcGCCgUCGGGCAacacGCAGGGg -3'
miRNA:   3'- -GUGcCGGgAGUUCGUguaaUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 120137 0.66 0.936549
Target:  5'- gCGCGGCCC-CAc-CGCGgccgaGGGGCg -3'
miRNA:   3'- -GUGCCGGGaGUucGUGUaaug-UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 50782 0.66 0.941426
Target:  5'- cCGCGGCCgCUCAauacaccucgcGGCGCugcggccggUACgguuuuacgggGGGGCg -3'
miRNA:   3'- -GUGCCGG-GAGU-----------UCGUGua-------AUG-----------UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 21746 0.66 0.941426
Target:  5'- -cCGGCCCgc--GCGCGcgGgGGGGCc -3'
miRNA:   3'- guGCCGGGaguuCGUGUaaUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 96439 0.66 0.941426
Target:  5'- gCGCGGCCC-CGgaGGCAC--UGgAGGcGCu -3'
miRNA:   3'- -GUGCCGGGaGU--UCGUGuaAUgUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 93084 0.66 0.941426
Target:  5'- --aGGCCCcCGcGCGCGcccgcaaaGCGGGGCg -3'
miRNA:   3'- gugCCGGGaGUuCGUGUaa------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 85998 0.66 0.941426
Target:  5'- gCGCGGCaacaaCUCAaaaaaggcggGGCGCG--GCGGGaGCg -3'
miRNA:   3'- -GUGCCGg----GAGU----------UCGUGUaaUGUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 29179 0.66 0.941426
Target:  5'- gGCGGCCCgccgCGccgccGGCGCc--GCcGGGCu -3'
miRNA:   3'- gUGCCGGGa---GU-----UCGUGuaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 115082 0.66 0.94047
Target:  5'- gCGCaGGCag-CGAGCGCAUUuuugcccgcgccCAGGGCg -3'
miRNA:   3'- -GUG-CCGggaGUUCGUGUAAu-----------GUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 25353 0.66 0.93853
Target:  5'- cCAC-GCCggCAAGCugAUggcagggggcggcgGCAGGGCg -3'
miRNA:   3'- -GUGcCGGgaGUUCGugUAa-------------UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.