miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 138 0.68 0.874039
Target:  5'- cCGCGGgCCUCGGGCccCGgccGgGGGGCc -3'
miRNA:   3'- -GUGCCgGGAGUUCGu-GUaa-UgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 417 0.67 0.888497
Target:  5'- gAgGGCCCggggCGGGCGgGcgGCGGcGGCg -3'
miRNA:   3'- gUgCCGGGa---GUUCGUgUaaUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 1141 0.69 0.816585
Target:  5'- gGCGGCgCCUCGGcGCGCGgcuccgGCAGcGCg -3'
miRNA:   3'- gUGCCG-GGAGUU-CGUGUaa----UGUCcCG- -5'
6567 5' -54.1 NC_001847.1 + 1419 0.7 0.770095
Target:  5'- aCGCGGCCCcgcgccccgcCAGGCACuauUUGCGcucGGGUg -3'
miRNA:   3'- -GUGCCGGGa---------GUUCGUGu--AAUGU---CCCG- -5'
6567 5' -54.1 NC_001847.1 + 1936 0.67 0.908386
Target:  5'- gGCGGCCaCUCGGGC-CGccgGCGcucguccucgccGGGCg -3'
miRNA:   3'- gUGCCGG-GAGUUCGuGUaa-UGU------------CCCG- -5'
6567 5' -54.1 NC_001847.1 + 2960 0.7 0.750522
Target:  5'- gGCGGCcgCCUCGGcGCGCAgcgccgcCGGGGCc -3'
miRNA:   3'- gUGCCG--GGAGUU-CGUGUaau----GUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 2991 0.66 0.935037
Target:  5'- uCGCGGCCC-CAcccuGCGCGgcaGCagcgccgcccaauaGGGGCg -3'
miRNA:   3'- -GUGCCGGGaGUu---CGUGUaa-UG--------------UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 3046 0.7 0.779691
Target:  5'- gGCGGCCCg-GAGCACGcgcucCGGGuGCg -3'
miRNA:   3'- gUGCCGGGagUUCGUGUaau--GUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 3278 0.72 0.637139
Target:  5'- gCGCGGCCggCGAGCACGgcgcGCAGcucGGCg -3'
miRNA:   3'- -GUGCCGGgaGUUCGUGUaa--UGUC---CCG- -5'
6567 5' -54.1 NC_001847.1 + 3540 0.73 0.626621
Target:  5'- cUACGGCCg-CGAGCGCG--GCGGcGGCg -3'
miRNA:   3'- -GUGCCGGgaGUUCGUGUaaUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 3806 0.66 0.92604
Target:  5'- aCGCGGCCgggCGgcggcGGCGCGcUGCcGGGCc -3'
miRNA:   3'- -GUGCCGGga-GU-----UCGUGUaAUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 3881 0.66 0.920407
Target:  5'- gGCGGCCCgUCGcgcGGCGCcgcgGCGuagccagcgcGGGCg -3'
miRNA:   3'- gUGCCGGG-AGU---UCGUGuaa-UGU----------CCCG- -5'
6567 5' -54.1 NC_001847.1 + 3997 0.67 0.907759
Target:  5'- gCGCGGCCCcgCGgggcgccgggcccGGCGCccgccucucGCGGGGCc -3'
miRNA:   3'- -GUGCCGGGa-GU-------------UCGUGuaa------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 4994 0.71 0.710137
Target:  5'- gGCGGCCgCggcaAAGCGCGgcgGCGGcGGCg -3'
miRNA:   3'- gUGCCGG-Gag--UUCGUGUaa-UGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 5011 0.66 0.936549
Target:  5'- uGCGccucGCCCUCGcGCGCG----AGGGCg -3'
miRNA:   3'- gUGC----CGGGAGUuCGUGUaaugUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 5208 0.69 0.816585
Target:  5'- -cCGGCUCUCucGCcgcgGCGgccgGCGGGGCg -3'
miRNA:   3'- guGCCGGGAGuuCG----UGUaa--UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 5661 0.69 0.816585
Target:  5'- --aGGCCCgccCAGGCGCGaaGguGGGCc -3'
miRNA:   3'- gugCCGGGa--GUUCGUGUaaUguCCCG- -5'
6567 5' -54.1 NC_001847.1 + 5862 0.76 0.435748
Target:  5'- -cUGGCCCUCGaggugguccAGCGCugcgcGCAGGGCg -3'
miRNA:   3'- guGCCGGGAGU---------UCGUGuaa--UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 6688 0.75 0.512918
Target:  5'- gGCGGCCggcCGGGCGCGcgcGCAGGGCc -3'
miRNA:   3'- gUGCCGGga-GUUCGUGUaa-UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 6731 0.66 0.941426
Target:  5'- -cUGGCCCUCAA-CAUA--GC-GGGCg -3'
miRNA:   3'- guGCCGGGAGUUcGUGUaaUGuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.