miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 135020 0.69 0.825389
Target:  5'- --aGGCCCgCGGGCGgGgc-CGGGGCg -3'
miRNA:   3'- gugCCGGGaGUUCGUgUaauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 134936 0.69 0.825389
Target:  5'- --gGGCCCcCGGGCGCcggggGCGGGGg -3'
miRNA:   3'- gugCCGGGaGUUCGUGuaa--UGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 134878 0.68 0.849841
Target:  5'- gGCGGCCCccgggcUCGGGCcccugggcgccggGCGU--CGGGGCg -3'
miRNA:   3'- gUGCCGGG------AGUUCG-------------UGUAauGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 134820 0.7 0.740566
Target:  5'- aCGCGGgCgUgGAGCGCGaagcuccgGCGGGGCg -3'
miRNA:   3'- -GUGCCgGgAgUUCGUGUaa------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 134764 0.72 0.658153
Target:  5'- gCGCGGUCCggc-GCGCGgcgcGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGaguuCGUGUaa--UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 134645 0.72 0.637139
Target:  5'- gGCGGgCCggcagCAGGCGCGgagGCGcGGGCa -3'
miRNA:   3'- gUGCCgGGa----GUUCGUGUaa-UGU-CCCG- -5'
6567 5' -54.1 NC_001847.1 + 134517 0.68 0.866465
Target:  5'- uGCGGCCg-C-GGCGCAUguggugguacACGGGGCg -3'
miRNA:   3'- gUGCCGGgaGuUCGUGUAa---------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 134139 0.67 0.888497
Target:  5'- gGCGGCCUggUgGAGCGCGUgccgccgcCGGcGGCg -3'
miRNA:   3'- gUGCCGGG--AgUUCGUGUAau------GUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 133801 0.69 0.816585
Target:  5'- aCAUGGCCgCgcaGGGCGCGgcGCuGGGGCu -3'
miRNA:   3'- -GUGCCGG-Gag-UUCGUGUaaUG-UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 133046 0.74 0.543306
Target:  5'- uCGCGGCCCgccgccGCGCGggccccGCGGGGCg -3'
miRNA:   3'- -GUGCCGGGaguu--CGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 132926 0.68 0.866465
Target:  5'- cCACGGCcgcgaCCUCuaccGCAUGUUugAGGuGCg -3'
miRNA:   3'- -GUGCCG-----GGAGuu--CGUGUAAugUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 132802 0.68 0.866465
Target:  5'- uGCGGCCCgugCAaaacGGCGgGUUccgcGCAgcGGGCg -3'
miRNA:   3'- gUGCCGGGa--GU----UCGUgUAA----UGU--CCCG- -5'
6567 5' -54.1 NC_001847.1 + 132712 0.68 0.866465
Target:  5'- gGCGGCCCUgCcGGC-CGccGCGGGGg -3'
miRNA:   3'- gUGCCGGGA-GuUCGuGUaaUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 132648 0.69 0.798456
Target:  5'- gGCGGCCCUCGcGacgucuucaCACGgcgGCGGGGg -3'
miRNA:   3'- gUGCCGGGAGUuC---------GUGUaa-UGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 132360 0.72 0.668632
Target:  5'- uCGCGGCCCUgGAGgcCGCcg-GCGGGGg -3'
miRNA:   3'- -GUGCCGGGAgUUC--GUGuaaUGUCCCg -5'
6567 5' -54.1 NC_001847.1 + 132254 0.68 0.866465
Target:  5'- gCGCGGUaCUCGAcGCGCGgcGCGGcGGCc -3'
miRNA:   3'- -GUGCCGgGAGUU-CGUGUaaUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 131992 0.66 0.941426
Target:  5'- gGCGGCCCgccgCGccgccGGCGCc--GCcGGGCu -3'
miRNA:   3'- gUGCCGGGa---GU-----UCGUGuaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 131774 0.7 0.789148
Target:  5'- gCGCGGCUCggCGcGCGgAUUGCGGcGGCc -3'
miRNA:   3'- -GUGCCGGGa-GUuCGUgUAAUGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 131588 0.73 0.605608
Target:  5'- gGCGcGCCUgcugCAgcGGCGCG-UGCAGGGCu -3'
miRNA:   3'- gUGC-CGGGa---GU--UCGUGUaAUGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 131120 0.67 0.890585
Target:  5'- aGCGGCCCcgcgagaggCGGGCGCcgggcccggcgccccGCGGGGCc -3'
miRNA:   3'- gUGCCGGGa--------GUUCGUGuaa------------UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.