Results 21 - 40 of 358 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6567 | 5' | -54.1 | NC_001847.1 | + | 128536 | 0.73 | 0.605608 |
Target: 5'- gCugGGCCCUucacaCAGGCAaaaGUagggagGCAGGGCc -3' miRNA: 3'- -GugCCGGGA-----GUUCGUg--UAa-----UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 90166 | 0.74 | 0.553571 |
Target: 5'- gCAUGGCCa---AGCGCAgccUUGCGGGGCu -3' miRNA: 3'- -GUGCCGGgaguUCGUGU---AAUGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 64154 | 0.75 | 0.502941 |
Target: 5'- uGCGGCCCgccaugCAGGCcgcuuGCGcggACGGGGCg -3' miRNA: 3'- gUGCCGGGa-----GUUCG-----UGUaa-UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 35185 | 0.77 | 0.399752 |
Target: 5'- aCGCGGCCUUCGAggaggagcGCGCGcgGCuGGGCg -3' miRNA: 3'- -GUGCCGGGAGUU--------CGUGUaaUGuCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 69328 | 0.72 | 0.679078 |
Target: 5'- gCGCGGgCCUCGGGCGCugcugGCGGcGCu -3' miRNA: 3'- -GUGCCgGGAGUUCGUGuaa--UGUCcCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 18333 | 0.72 | 0.637139 |
Target: 5'- gCGCGGCUg-CAGGCGCGUUACcgucGGcGGCa -3' miRNA: 3'- -GUGCCGGgaGUUCGUGUAAUG----UC-CCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 8061 | 0.74 | 0.533105 |
Target: 5'- gCGCGGCCCgc--GCGCAgaGgGGGGCa -3' miRNA: 3'- -GUGCCGGGaguuCGUGUaaUgUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 15411 | 0.79 | 0.30384 |
Target: 5'- gGCGGCCCUgGAGCGCG--GCAcGGCg -3' miRNA: 3'- gUGCCGGGAgUUCGUGUaaUGUcCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 114878 | 0.72 | 0.636087 |
Target: 5'- uGCGGCCUUUAaaggauAGCACAUgGCgcgcgcgGGGGCg -3' miRNA: 3'- gUGCCGGGAGU------UCGUGUAaUG-------UCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 30497 | 0.79 | 0.289685 |
Target: 5'- gCGCGGCCCUCGGGCGCGcgcuagacgACAGugccGGCg -3' miRNA: 3'- -GUGCCGGGAGUUCGUGUaa-------UGUC----CCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 133046 | 0.74 | 0.543306 |
Target: 5'- uCGCGGCCCgccgccGCGCGggccccGCGGGGCg -3' miRNA: 3'- -GUGCCGGGaguu--CGUGUaa----UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 131588 | 0.73 | 0.605608 |
Target: 5'- gGCGcGCCUgcugCAgcGGCGCG-UGCAGGGCu -3' miRNA: 3'- gUGC-CGGGa---GU--UCGUGUaAUGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 17464 | 0.74 | 0.519949 |
Target: 5'- gGCGGCCgUCAgggAGCGCAcggucaggggcaagUUGCGGGGg -3' miRNA: 3'- gUGCCGGgAGU---UCGUGU--------------AAUGUCCCg -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 6688 | 0.75 | 0.512918 |
Target: 5'- gGCGGCCggcCGGGCGCGcgcGCAGGGCc -3' miRNA: 3'- gUGCCGGga-GUUCGUGUaa-UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 55437 | 0.76 | 0.454433 |
Target: 5'- aCGCGGUCCUgCAgcgccuGGCGCcg-GCGGGGCg -3' miRNA: 3'- -GUGCCGGGA-GU------UCGUGuaaUGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 68054 | 0.77 | 0.408573 |
Target: 5'- aCACGGCggCCUCGcGGCGCGccugcgGCGGGGCg -3' miRNA: 3'- -GUGCCG--GGAGU-UCGUGUaa----UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 72125 | 0.71 | 0.689485 |
Target: 5'- -cCGGCCUUCGcgcgcGGCGCGUgcUGCAgcauGGGCg -3' miRNA: 3'- guGCCGGGAGU-----UCGUGUA--AUGU----CCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 120824 | 0.72 | 0.679078 |
Target: 5'- -cCGGCCCcaccgCGAGCAgCGggaGCGGGGCc -3' miRNA: 3'- guGCCGGGa----GUUCGU-GUaa-UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 134764 | 0.72 | 0.658153 |
Target: 5'- gCGCGGUCCggc-GCGCGgcgcGCGGGGCg -3' miRNA: 3'- -GUGCCGGGaguuCGUGUaa--UGUCCCG- -5' |
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6567 | 5' | -54.1 | NC_001847.1 | + | 106091 | 0.72 | 0.637139 |
Target: 5'- gCGCGGCCggCGAGCACGgcgcGCAGcucGGCg -3' miRNA: 3'- -GUGCCGGgaGUUCGUGUaa--UGUC---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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