miRNA display CGI


Results 1 - 20 of 523 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6577 5' -57.3 NC_001847.1 + 12786 0.65 0.823687
Target:  5'- cGCUGUGCCGCacgccgcccaacgaUcagcgcGUGGCgCGCGAGCGGc -3'
miRNA:   3'- aCGACGCGGUG--------------A------CGCUG-GUGUUCGUC- -5'
6577 5' -57.3 NC_001847.1 + 44362 0.65 0.823687
Target:  5'- gGCUGCugaacgggccccucGCCGCgcagGCGuuCCGCGAcGCGGu -3'
miRNA:   3'- aCGACG--------------CGGUGa---CGCu-GGUGUU-CGUC- -5'
6577 5' -57.3 NC_001847.1 + 105165 0.66 0.817599
Target:  5'- cGCcGCGCCGgccCGGCCGCGucGGCGGc -3'
miRNA:   3'- aCGaCGCGGUgacGCUGGUGU--UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 37210 0.66 0.817599
Target:  5'- cGCccgGUGCCGCUugGCGGCgGCGcggacgacccGGCGGa -3'
miRNA:   3'- aCGa--CGCGGUGA--CGCUGgUGU----------UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 39188 0.66 0.817599
Target:  5'- cUGCUGCGCuCACgcuCGcCCGCcAGCGu -3'
miRNA:   3'- -ACGACGCG-GUGac-GCuGGUGuUCGUc -5'
6577 5' -57.3 NC_001847.1 + 50157 0.66 0.817599
Target:  5'- gGCcGUGUCGaucgagGCGGCCAUGAGCAc -3'
miRNA:   3'- aCGaCGCGGUga----CGCUGGUGUUCGUc -5'
6577 5' -57.3 NC_001847.1 + 18136 0.66 0.817599
Target:  5'- aGgaGCGCCcaggcgaaaauaGCUGCGaucaGCCACGcucgccccAGCGGg -3'
miRNA:   3'- aCgaCGCGG------------UGACGC----UGGUGU--------UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 12082 0.66 0.817599
Target:  5'- cGgaGCGCCGCggguccgGCGcCCGCGgccguacuuccAGCGGc -3'
miRNA:   3'- aCgaCGCGGUGa------CGCuGGUGU-----------UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 33235 0.66 0.817599
Target:  5'- cGCgccggGCGCCGCgGCGccuCCGCugccGCGGu -3'
miRNA:   3'- aCGa----CGCGGUGaCGCu--GGUGuu--CGUC- -5'
6577 5' -57.3 NC_001847.1 + 59119 0.66 0.817599
Target:  5'- cGCcGcCGCCGCUcCGGCCGCGcGGguGg -3'
miRNA:   3'- aCGaC-GCGGUGAcGCUGGUGU-UCguC- -5'
6577 5' -57.3 NC_001847.1 + 106366 0.66 0.817599
Target:  5'- cUGCacGCGCCGCUGCa---GCAGGCGc -3'
miRNA:   3'- -ACGa-CGCGGUGACGcuggUGUUCGUc -5'
6577 5' -57.3 NC_001847.1 + 29806 0.66 0.817599
Target:  5'- cGCgaGCGCCcCgGCGcCCACGAcgacGCAGg -3'
miRNA:   3'- aCGa-CGCGGuGaCGCuGGUGUU----CGUC- -5'
6577 5' -57.3 NC_001847.1 + 66554 0.66 0.817599
Target:  5'- cGCgUGCGCCuACUGCGGCaGCGuguucguGCGa -3'
miRNA:   3'- aCG-ACGCGG-UGACGCUGgUGUu------CGUc -5'
6577 5' -57.3 NC_001847.1 + 81310 0.66 0.817599
Target:  5'- aGC-GcCGCCGCUGCcGCCGCcAGCc- -3'
miRNA:   3'- aCGaC-GCGGUGACGcUGGUGuUCGuc -5'
6577 5' -57.3 NC_001847.1 + 2352 0.66 0.817599
Target:  5'- cGCcGCGCCGgccCGGCCGCGucGGCGGc -3'
miRNA:   3'- aCGaCGCGGUgacGCUGGUGU--UCGUC- -5'
6577 5' -57.3 NC_001847.1 + 3553 0.66 0.817599
Target:  5'- cUGCacGCGCCGCUGCa---GCAGGCGc -3'
miRNA:   3'- -ACGa-CGCGGUGACGcuggUGUUCGUc -5'
6577 5' -57.3 NC_001847.1 + 81001 0.66 0.817599
Target:  5'- ---aGCGCCAUcuccgccGCGGCCACuuGCAGc -3'
miRNA:   3'- acgaCGCGGUGa------CGCUGGUGuuCGUC- -5'
6577 5' -57.3 NC_001847.1 + 106142 0.66 0.817599
Target:  5'- aGCUGCGCCAgcaCGGCgCGCucuAGCAu -3'
miRNA:   3'- aCGACGCGGUgacGCUG-GUGu--UCGUc -5'
6577 5' -57.3 NC_001847.1 + 130949 0.66 0.817599
Target:  5'- gGCUGC-CUGCgcGCGGCCcACGGGCGc -3'
miRNA:   3'- aCGACGcGGUGa-CGCUGG-UGUUCGUc -5'
6577 5' -57.3 NC_001847.1 + 8464 0.66 0.814963
Target:  5'- gGCgGCGCCgggccgggggcggcGCU-CGGCCGgGGGCGGg -3'
miRNA:   3'- aCGaCGCGG--------------UGAcGCUGGUgUUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.