miRNA display CGI


Results 41 - 60 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 3' -54.4 NC_001847.1 + 29010 0.66 0.931777
Target:  5'- cCGUGCugGCGca-GCUAUCgCGCccagaGCCg -3'
miRNA:   3'- -GCACGugUGCaagUGGUAG-GCGa----CGG- -5'
6598 3' -54.4 NC_001847.1 + 130248 0.66 0.931777
Target:  5'- gGUGUcguucgcagcgGCGCGgggGCCcugCCGCUGCCc -3'
miRNA:   3'- gCACG-----------UGUGCaagUGGua-GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 94804 0.66 0.931777
Target:  5'- --cGCGCACucaaggUCGCCGagggCCGCaGCCg -3'
miRNA:   3'- gcaCGUGUGca----AGUGGUa---GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 92047 0.66 0.931777
Target:  5'- cCG-GCGCcucCGggCGCC-UCCGCcGCCg -3'
miRNA:   3'- -GCaCGUGu--GCaaGUGGuAGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 80334 0.66 0.931777
Target:  5'- cCGUGCcCGCGcUCGCCAg-CGCgGCg -3'
miRNA:   3'- -GCACGuGUGCaAGUGGUagGCGaCGg -5'
6598 3' -54.4 NC_001847.1 + 115818 0.66 0.931777
Target:  5'- gCG-GCGCuuGCGUUaacaGCCAcggCCGCgGCCg -3'
miRNA:   3'- -GCaCGUG--UGCAAg---UGGUa--GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 106410 0.66 0.931777
Target:  5'- --cGCGCGCGgcgaCGCUGcCCGCgGCCg -3'
miRNA:   3'- gcaCGUGUGCaa--GUGGUaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 80551 0.66 0.931777
Target:  5'- gCGgGCGCGCGc-CGCCAgcgCCGCccaGCCc -3'
miRNA:   3'- -GCaCGUGUGCaaGUGGUa--GGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 13603 0.66 0.931777
Target:  5'- gCGUGCGC-CGUUCcCCGgaaCGCaGCUc -3'
miRNA:   3'- -GCACGUGuGCAAGuGGUag-GCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 85476 0.66 0.931777
Target:  5'- -uUGCACAUGUaCACCGUCUcCUugaaaGCCu -3'
miRNA:   3'- gcACGUGUGCAaGUGGUAGGcGA-----CGG- -5'
6598 3' -54.4 NC_001847.1 + 130919 0.66 0.931777
Target:  5'- cCG-GCGCGCGccggCACCGcgcagggcuUUgGCUGCCu -3'
miRNA:   3'- -GCaCGUGUGCaa--GUGGU---------AGgCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 27435 0.66 0.931777
Target:  5'- gGUGUcguucgcagcgGCGCGgggGCCcugCCGCUGCCc -3'
miRNA:   3'- gCACG-----------UGUGCaagUGGua-GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 12900 0.66 0.931777
Target:  5'- --aGCACGCGgaagcgcgCGCCGUgCCGCcGCg -3'
miRNA:   3'- gcaCGUGUGCaa------GUGGUA-GGCGaCGg -5'
6598 3' -54.4 NC_001847.1 + 12562 0.66 0.931777
Target:  5'- gGUGCGCaACGggCGCCGcguaCGCggcGCCc -3'
miRNA:   3'- gCACGUG-UGCaaGUGGUag--GCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 30932 0.66 0.931777
Target:  5'- cCGUGCcccGCGCGagUACCGgcagcgCgUGCUGCCg -3'
miRNA:   3'- -GCACG---UGUGCaaGUGGUa-----G-GCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 116921 0.66 0.930216
Target:  5'- --aGCACGCGccgagagccgcacagC-CCGUaCCGCUGCCu -3'
miRNA:   3'- gcaCGUGUGCaa-------------GuGGUA-GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 79633 0.66 0.926487
Target:  5'- aCGUGgucUACGCGcUCGCCG-CCGaaccaCUGCCg -3'
miRNA:   3'- -GCAC---GUGUGCaAGUGGUaGGC-----GACGG- -5'
6598 3' -54.4 NC_001847.1 + 93853 0.66 0.926487
Target:  5'- aCGUcGCGCACua-CGCCggCgCGCUGCUg -3'
miRNA:   3'- -GCA-CGUGUGcaaGUGGuaG-GCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 87281 0.66 0.926487
Target:  5'- aCGUGCGCGCcgacgGCCcgcggCCGCgGCCg -3'
miRNA:   3'- -GCACGUGUGcaag-UGGua---GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 58243 0.66 0.926487
Target:  5'- gCGgcgGCGCGCGacCGCCcUCCGUcaggcagGCCu -3'
miRNA:   3'- -GCa--CGUGUGCaaGUGGuAGGCGa------CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.