Results 21 - 40 of 271 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6598 | 3' | -54.4 | NC_001847.1 | + | 62091 | 0.72 | 0.685048 |
Target: 5'- --cGCgGCGCGUugcuUCGCCAgcagguuguccgcggCCGCUGCCg -3' miRNA: 3'- gcaCG-UGUGCA----AGUGGUa--------------GGCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 18525 | 0.72 | 0.653064 |
Target: 5'- gCGcUGCGgGCGcgcCGCCGUCCGC-GCCg -3' miRNA: 3'- -GC-ACGUgUGCaa-GUGGUAGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 33235 | 0.75 | 0.518868 |
Target: 5'- --cGCGC-CGggCGCCGcggcgccUCCGCUGCCg -3' miRNA: 3'- gcaCGUGuGCaaGUGGU-------AGGCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 40774 | 0.77 | 0.398592 |
Target: 5'- aCGUGCGCGCGgcagaCGCCG-CCGC-GCCa -3' miRNA: 3'- -GCACGUGUGCaa---GUGGUaGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 15314 | 0.7 | 0.773492 |
Target: 5'- gCGUGCGCGaccCGUacaugaUCgcgGCCAUCCGCgcgcagUGCCg -3' miRNA: 3'- -GCACGUGU---GCA------AG---UGGUAGGCG------ACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 58598 | 0.71 | 0.724637 |
Target: 5'- -uUGCGCGCGggcUCGCCuuUCgcuagCGCUGCCg -3' miRNA: 3'- gcACGUGUGCa--AGUGGu-AG-----GCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 18590 | 0.73 | 0.62195 |
Target: 5'- aCGUGCGCcauuaGcgCGCCGUCCGCgGCg -3' miRNA: 3'- -GCACGUGug---CaaGUGGUAGGCGaCGg -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 76825 | 0.77 | 0.381584 |
Target: 5'- uGUGCACuauACGcggCGCCAUCCGgcCUGCCg -3' miRNA: 3'- gCACGUG---UGCaa-GUGGUAGGC--GACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 73106 | 0.71 | 0.714582 |
Target: 5'- uCGUGCGCACaGUcaaCGCCGggagCCGCauacgGCCg -3' miRNA: 3'- -GCACGUGUG-CAa--GUGGUa---GGCGa----CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 37250 | 0.86 | 0.129724 |
Target: 5'- aCG-GCGCGCuGUUCGCCAUCCGCgccGCCg -3' miRNA: 3'- -GCaCGUGUG-CAAGUGGUAGGCGa--CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 76900 | 0.73 | 0.62195 |
Target: 5'- aCGgaggGCGguCGcgCGCCG-CCGCUGCCg -3' miRNA: 3'- -GCa---CGUguGCaaGUGGUaGGCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 36359 | 0.72 | 0.694265 |
Target: 5'- gCGcGCGCACGcggCGCCG-CCGCgGCCc -3' miRNA: 3'- -GCaCGUGUGCaa-GUGGUaGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 96552 | 0.73 | 0.601234 |
Target: 5'- uGUGCAgcCGCGcgCGCgGUCUGCUGgCCg -3' miRNA: 3'- gCACGU--GUGCaaGUGgUAGGCGAC-GG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 54788 | 0.74 | 0.570353 |
Target: 5'- -uUGCGCACGccgCGCCuUCCGC-GCCg -3' miRNA: 3'- gcACGUGUGCaa-GUGGuAGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 61275 | 0.75 | 0.500147 |
Target: 5'- --cGCGCGCGggCGCCGcgCCGCcGCCu -3' miRNA: 3'- gcaCGUGUGCaaGUGGUa-GGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 65660 | 0.77 | 0.416078 |
Target: 5'- gCGUGCGCGCccgCACCAUCgCGCagcugGCCg -3' miRNA: 3'- -GCACGUGUGcaaGUGGUAG-GCGa----CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 45543 | 0.7 | 0.782912 |
Target: 5'- cCGUGCcgcgcaGCGCGUUCACCgcggcggcGUCgCGCUccacGCCc -3' miRNA: 3'- -GCACG------UGUGCAAGUGG--------UAG-GCGA----CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 63170 | 0.7 | 0.773492 |
Target: 5'- --cGCGCACGUcggUCGCgGUCgCGC-GCCa -3' miRNA: 3'- gcaCGUGUGCA---AGUGgUAG-GCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 92731 | 0.7 | 0.750373 |
Target: 5'- gCGUGCucgcgcaGCGCGUggcaggccaggaccUCGCCGUgcagCCGCUGCa -3' miRNA: 3'- -GCACG-------UGUGCA--------------AGUGGUA----GGCGACGg -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 59228 | 0.71 | 0.724637 |
Target: 5'- -uUGCACGCGUcgGCCGUCgGCgauggcGCCg -3' miRNA: 3'- gcACGUGUGCAagUGGUAGgCGa-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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