miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 3' -54.4 NC_001847.1 + 64554 1.12 0.002324
Target:  5'- cCGUGCACACGUUCACCAUCCGCUGCCu -3'
miRNA:   3'- -GCACGUGUGCAAGUGGUAGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 18590 0.73 0.62195
Target:  5'- aCGUGCGCcauuaGcgCGCCGUCCGCgGCg -3'
miRNA:   3'- -GCACGUGug---CaaGUGGUAGGCGaCGg -5'
6598 3' -54.4 NC_001847.1 + 18525 0.72 0.653064
Target:  5'- gCGcUGCGgGCGcgcCGCCGUCCGC-GCCg -3'
miRNA:   3'- -GC-ACGUgUGCaa-GUGGUAGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 117408 0.66 0.946176
Target:  5'- gGUGCGCGCGguggaCGCUucgcgCgGCUGCg -3'
miRNA:   3'- gCACGUGUGCaa---GUGGua---GgCGACGg -5'
6598 3' -54.4 NC_001847.1 + 65660 0.77 0.416078
Target:  5'- gCGUGCGCGCccgCACCAUCgCGCagcugGCCg -3'
miRNA:   3'- -GCACGUGUGcaaGUGGUAG-GCGa----CGG- -5'
6598 3' -54.4 NC_001847.1 + 55463 0.76 0.461767
Target:  5'- gCGggGCGCGCGccgCGCUAgCCGCUGCCc -3'
miRNA:   3'- -GCa-CGUGUGCaa-GUGGUaGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 61275 0.75 0.500147
Target:  5'- --cGCGCGCGggCGCCGcgCCGCcGCCu -3'
miRNA:   3'- gcaCGUGUGCaaGUGGUa-GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 15552 0.75 0.508979
Target:  5'- gGUGCGCGCGcg-GCCGUcgggccgcggccgCCGCUGCCc -3'
miRNA:   3'- gCACGUGUGCaagUGGUA-------------GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 54788 0.74 0.570353
Target:  5'- -uUGCGCACGccgCGCCuUCCGC-GCCg -3'
miRNA:   3'- gcACGUGUGCaa-GUGGuAGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 13119 0.73 0.601234
Target:  5'- cCGggGCGCGCGggcggCGCCGcgCCGCcUGCCg -3'
miRNA:   3'- -GCa-CGUGUGCaa---GUGGUa-GGCG-ACGG- -5'
6598 3' -54.4 NC_001847.1 + 73636 0.73 0.590907
Target:  5'- cCGUGCGCGCuGUUUcaggaggcguACCcgCCGCUGUg -3'
miRNA:   3'- -GCACGUGUG-CAAG----------UGGuaGGCGACGg -5'
6598 3' -54.4 NC_001847.1 + 33235 0.75 0.518868
Target:  5'- --cGCGC-CGggCGCCGcggcgccUCCGCUGCCg -3'
miRNA:   3'- gcaCGUGuGCaaGUGGU-------AGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 37250 0.86 0.129724
Target:  5'- aCG-GCGCGCuGUUCGCCAUCCGCgccGCCg -3'
miRNA:   3'- -GCaCGUGUG-CAAGUGGUAGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 96552 0.73 0.601234
Target:  5'- uGUGCAgcCGCGcgCGCgGUCUGCUGgCCg -3'
miRNA:   3'- gCACGU--GUGCaaGUGgUAGGCGAC-GG- -5'
6598 3' -54.4 NC_001847.1 + 76825 0.77 0.381584
Target:  5'- uGUGCACuauACGcggCGCCAUCCGgcCUGCCg -3'
miRNA:   3'- gCACGUG---UGCaa-GUGGUAGGC--GACGG- -5'
6598 3' -54.4 NC_001847.1 + 49931 0.75 0.509964
Target:  5'- gCGUGCGCACGUUggaCGCCGUggCgCGCggUGCCg -3'
miRNA:   3'- -GCACGUGUGCAA---GUGGUA--G-GCG--ACGG- -5'
6598 3' -54.4 NC_001847.1 + 667 0.73 0.601234
Target:  5'- cCGUGCACuuCGUUgGCCGcgCCuaUGCCa -3'
miRNA:   3'- -GCACGUGu-GCAAgUGGUa-GGcgACGG- -5'
6598 3' -54.4 NC_001847.1 + 76900 0.73 0.62195
Target:  5'- aCGgaggGCGguCGcgCGCCG-CCGCUGCCg -3'
miRNA:   3'- -GCa---CGUguGCaaGUGGUaGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 40774 0.77 0.398592
Target:  5'- aCGUGCGCGCGgcagaCGCCG-CCGC-GCCa -3'
miRNA:   3'- -GCACGUGUGCaa---GUGGUaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 22090 0.75 0.48077
Target:  5'- aCGUGCGCcgACGcgCugCggCUGCUGCCg -3'
miRNA:   3'- -GCACGUG--UGCaaGugGuaGGCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.