miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 3' -54.4 NC_001847.1 + 667 0.73 0.601234
Target:  5'- cCGUGCACuuCGUUgGCCGcgCCuaUGCCa -3'
miRNA:   3'- -GCACGUGu-GCAAgUGGUa-GGcgACGG- -5'
6598 3' -54.4 NC_001847.1 + 1001 0.72 0.694265
Target:  5'- gCGgcgGCACGCGcucCACCAggCCGCcGCCc -3'
miRNA:   3'- -GCa--CGUGUGCaa-GUGGUa-GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 1370 0.69 0.844458
Target:  5'- gCGUGCGCGUGUgUCGCCGagCCGacuUGCCc -3'
miRNA:   3'- -GCACGUGUGCA-AGUGGUa-GGCg--ACGG- -5'
6598 3' -54.4 NC_001847.1 + 1460 0.68 0.868024
Target:  5'- uGUaGCGCACGUU-GCCG-CCGCggcagaGCCg -3'
miRNA:   3'- gCA-CGUGUGCAAgUGGUaGGCGa-----CGG- -5'
6598 3' -54.4 NC_001847.1 + 1576 0.67 0.902882
Target:  5'- --aGCACgGCGcgCGCCAgcgcgCCGCUcggGCCa -3'
miRNA:   3'- gcaCGUG-UGCaaGUGGUa----GGCGA---CGG- -5'
6598 3' -54.4 NC_001847.1 + 1654 0.67 0.902242
Target:  5'- aCGUGCGCcugcccgACGgccggGCCGUCgCGCgGCCa -3'
miRNA:   3'- -GCACGUG-------UGCaag--UGGUAG-GCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 2265 0.68 0.860378
Target:  5'- cCGggcgGCACGCGgcggaagcCGCCGUCgGCggcgggGCCg -3'
miRNA:   3'- -GCa---CGUGUGCaa------GUGGUAGgCGa-----CGG- -5'
6598 3' -54.4 NC_001847.1 + 2602 0.68 0.85252
Target:  5'- --cGCACGCGa--GCCcgCCGC-GCCg -3'
miRNA:   3'- gcaCGUGUGCaagUGGuaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 2825 0.66 0.93682
Target:  5'- cCGUGCugAggguugcgaucuCGgggucCGCCAUgCCGCUGCg -3'
miRNA:   3'- -GCACGugU------------GCaa---GUGGUA-GGCGACGg -5'
6598 3' -54.4 NC_001847.1 + 3215 0.7 0.773492
Target:  5'- cCG-GCGCACGU--GCC-UCCGCgccGCCg -3'
miRNA:   3'- -GCaCGUGUGCAagUGGuAGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 3246 0.69 0.810301
Target:  5'- cCGUGCucgccggcgGCAgGggCGCCGgcgCCGCgcgGCCg -3'
miRNA:   3'- -GCACG---------UGUgCaaGUGGUa--GGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 3634 0.66 0.93682
Target:  5'- gCG-GCGCGCGUaCACCAggUCCaccaGC-GCCg -3'
miRNA:   3'- -GCaCGUGUGCAaGUGGU--AGG----CGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 3752 0.68 0.882656
Target:  5'- cCGUGCAgCGCuucgUCGCCGUCgaGCaGCCc -3'
miRNA:   3'- -GCACGU-GUGca--AGUGGUAGg-CGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 4520 0.7 0.782912
Target:  5'- aCGUGCGCACGacgUGCCucgCgGCgGCCg -3'
miRNA:   3'- -GCACGUGUGCaa-GUGGua-GgCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 6942 0.67 0.915173
Target:  5'- aGUGCuucCGCGgUCcCCcUCCGCccUGCCg -3'
miRNA:   3'- gCACGu--GUGCaAGuGGuAGGCG--ACGG- -5'
6598 3' -54.4 NC_001847.1 + 9549 0.67 0.902882
Target:  5'- gCGUGCGCcaGCGcugcaGCCGUCCaGCccGCCg -3'
miRNA:   3'- -GCACGUG--UGCaag--UGGUAGG-CGa-CGG- -5'
6598 3' -54.4 NC_001847.1 + 10593 0.66 0.946176
Target:  5'- cCGcGCGCGCGggccggCGCCGgcCCGC-GCCc -3'
miRNA:   3'- -GCaCGUGUGCaa----GUGGUa-GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 12562 0.66 0.931777
Target:  5'- gGUGCGCaACGggCGCCGcguaCGCggcGCCc -3'
miRNA:   3'- gCACGUG-UGCaaGUGGUag--GCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 12900 0.66 0.931777
Target:  5'- --aGCACGCGgaagcgcgCGCCGUgCCGCcGCg -3'
miRNA:   3'- gcaCGUGUGCaa------GUGGUA-GGCGaCGg -5'
6598 3' -54.4 NC_001847.1 + 13101 0.66 0.946176
Target:  5'- --aGUACACGc-CGCCGUCCuccucgGCUGCg -3'
miRNA:   3'- gcaCGUGUGCaaGUGGUAGG------CGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.