miRNA display CGI


Results 1 - 20 of 271 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 3' -54.4 NC_001847.1 + 64554 1.12 0.002324
Target:  5'- cCGUGCACACGUUCACCAUCCGCUGCCu -3'
miRNA:   3'- -GCACGUGUGCAAGUGGUAGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 37250 0.86 0.129724
Target:  5'- aCG-GCGCGCuGUUCGCCAUCCGCgccGCCg -3'
miRNA:   3'- -GCaCGUGUG-CAAGUGGUAGGCGa--CGG- -5'
6598 3' -54.4 NC_001847.1 + 85225 0.81 0.23341
Target:  5'- aCGUGCGCACGcgcagCGCCA-CCGCgGCCg -3'
miRNA:   3'- -GCACGUGUGCaa---GUGGUaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 63226 0.79 0.311236
Target:  5'- gCGUGCGCGCGccgcgCGCCGgguccgCCGCUGCa -3'
miRNA:   3'- -GCACGUGUGCaa---GUGGUa-----GGCGACGg -5'
6598 3' -54.4 NC_001847.1 + 131203 0.78 0.373264
Target:  5'- uGUGgGuCGCGcUCGCCGcCCGCUGCCa -3'
miRNA:   3'- gCACgU-GUGCaAGUGGUaGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 76825 0.77 0.381584
Target:  5'- uGUGCACuauACGcggCGCCAUCCGgcCUGCCg -3'
miRNA:   3'- gCACGUG---UGCaa-GUGGUAGGC--GACGG- -5'
6598 3' -54.4 NC_001847.1 + 40774 0.77 0.398592
Target:  5'- aCGUGCGCGCGgcagaCGCCG-CCGC-GCCa -3'
miRNA:   3'- -GCACGUGUGCaa---GUGGUaGGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 65660 0.77 0.416078
Target:  5'- gCGUGCGCGCccgCACCAUCgCGCagcugGCCg -3'
miRNA:   3'- -GCACGUGUGcaaGUGGUAG-GCGa----CGG- -5'
6598 3' -54.4 NC_001847.1 + 62051 0.77 0.424995
Target:  5'- uGUGCGCACGaa-GCCGUCCGCguccCCg -3'
miRNA:   3'- gCACGUGUGCaagUGGUAGGCGac--GG- -5'
6598 3' -54.4 NC_001847.1 + 71989 0.76 0.452414
Target:  5'- aCGUGCGCGCcugcgCGCCGggaUCCGgUGCCa -3'
miRNA:   3'- -GCACGUGUGcaa--GUGGU---AGGCgACGG- -5'
6598 3' -54.4 NC_001847.1 + 55463 0.76 0.461767
Target:  5'- gCGggGCGCGCGccgCGCUAgCCGCUGCCc -3'
miRNA:   3'- -GCa-CGUGUGCaa-GUGGUaGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 60368 0.75 0.48077
Target:  5'- aCGUGCACACcUUCGCCAgggggCgCGC-GCCg -3'
miRNA:   3'- -GCACGUGUGcAAGUGGUa----G-GCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 22090 0.75 0.48077
Target:  5'- aCGUGCGCcgACGcgCugCggCUGCUGCCg -3'
miRNA:   3'- -GCACGUG--UGCaaGugGuaGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 74837 0.75 0.490414
Target:  5'- gGUgGCGCGCGcgCGCCGcccgccgccCCGCUGCCg -3'
miRNA:   3'- gCA-CGUGUGCaaGUGGUa--------GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 61275 0.75 0.500147
Target:  5'- --cGCGCGCGggCGCCGcgCCGCcGCCu -3'
miRNA:   3'- gcaCGUGUGCaaGUGGUa-GGCGaCGG- -5'
6598 3' -54.4 NC_001847.1 + 15552 0.75 0.508979
Target:  5'- gGUGCGCGCGcg-GCCGUcgggccgcggccgCCGCUGCCc -3'
miRNA:   3'- gCACGUGUGCaagUGGUA-------------GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 49931 0.75 0.509964
Target:  5'- gCGUGCGCACGUUggaCGCCGUggCgCGCggUGCCg -3'
miRNA:   3'- -GCACGUGUGCAA---GUGGUA--G-GCG--ACGG- -5'
6598 3' -54.4 NC_001847.1 + 33235 0.75 0.518868
Target:  5'- --cGCGC-CGggCGCCGcggcgccUCCGCUGCCg -3'
miRNA:   3'- gcaCGUGuGCaaGUGGU-------AGGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 37180 0.75 0.519861
Target:  5'- uCGUGCugACGUacaGCCAccccucgCCGCUGUCa -3'
miRNA:   3'- -GCACGugUGCAag-UGGUa------GGCGACGG- -5'
6598 3' -54.4 NC_001847.1 + 65698 0.75 0.529833
Target:  5'- cCGcGCGCGCGc-CGCCGUCCGCcaccGCCg -3'
miRNA:   3'- -GCaCGUGUGCaaGUGGUAGGCGa---CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.