Results 1 - 20 of 271 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6598 | 3' | -54.4 | NC_001847.1 | + | 56478 | 0.65 | 0.949222 |
Target: 5'- gCGUGCGCACGccggcgacgcaggcgCGCgCGaCCGCgccGCCa -3' miRNA: 3'- -GCACGUGUGCaa-------------GUG-GUaGGCGa--CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 46546 | 0.66 | 0.941619 |
Target: 5'- --cGCGCGCGaggUCcuCCAgCCGCgcgGCCg -3' miRNA: 3'- gcaCGUGUGCa--AGu-GGUaGGCGa--CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 28795 | 0.66 | 0.940679 |
Target: 5'- gCGUGCagggcugccggggccACAgcuCGUucaUCACCGggagcgugacggcgCCGCUGCCg -3' miRNA: 3'- -GCACG---------------UGU---GCA---AGUGGUa-------------GGCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 45588 | 0.66 | 0.937311 |
Target: 5'- gGUGCucACGCGgcccgcgggccaaucUgACCcgUCGCUGCCg -3' miRNA: 3'- gCACG--UGUGCa--------------AgUGGuaGGCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 123054 | 0.66 | 0.93682 |
Target: 5'- aCG-GC-CGCGggCGCCGgacccgcggcgcUCCGCgGCCu -3' miRNA: 3'- -GCaCGuGUGCaaGUGGU------------AGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 102294 | 0.66 | 0.93682 |
Target: 5'- --cGCGCGCGagCGCCGcggucUCgGCgGCCa -3' miRNA: 3'- gcaCGUGUGCaaGUGGU-----AGgCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 79690 | 0.66 | 0.93682 |
Target: 5'- gCG-GCGCGCGccccgccggCGCCAggCGCUGCa -3' miRNA: 3'- -GCaCGUGUGCaa-------GUGGUagGCGACGg -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 3634 | 0.66 | 0.93682 |
Target: 5'- gCG-GCGCGCGUaCACCAggUCCaccaGC-GCCg -3' miRNA: 3'- -GCaCGUGUGCAaGUGGU--AGG----CGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 38128 | 0.66 | 0.93682 |
Target: 5'- gGUGCGC-CGggCACCGagucUUCGCgcggcgcGCCg -3' miRNA: 3'- gCACGUGuGCaaGUGGU----AGGCGa------CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 81390 | 0.66 | 0.941619 |
Target: 5'- gGUGCGCAC--UCGCa----GCUGCCg -3' miRNA: 3'- gCACGUGUGcaAGUGguaggCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 102010 | 0.66 | 0.941619 |
Target: 5'- --cGcCACGCGgaagCGCUcgCCGCcGCCg -3' miRNA: 3'- gcaC-GUGUGCaa--GUGGuaGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 65795 | 0.66 | 0.941619 |
Target: 5'- --cGCGCGCGccagCACCAg-CGCcGCCa -3' miRNA: 3'- gcaCGUGUGCaa--GUGGUagGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 117408 | 0.66 | 0.946176 |
Target: 5'- gGUGCGCGCGguggaCGCUucgcgCgGCUGCg -3' miRNA: 3'- gCACGUGUGCaa---GUGGua---GgCGACGg -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 48703 | 0.66 | 0.946176 |
Target: 5'- aCGUGCACGCug-C-CCGcgCCGCgcagcGCCg -3' miRNA: 3'- -GCACGUGUGcaaGuGGUa-GGCGa----CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 13101 | 0.66 | 0.946176 |
Target: 5'- --aGUACACGc-CGCCGUCCuccucgGCUGCg -3' miRNA: 3'- gcaCGUGUGCaaGUGGUAGG------CGACGg -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 98632 | 0.66 | 0.946176 |
Target: 5'- gCGUGCACAC---CGCCGcUUCGUcGCCc -3' miRNA: 3'- -GCACGUGUGcaaGUGGU-AGGCGaCGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 62521 | 0.66 | 0.946176 |
Target: 5'- aGUGCgGCACGggCGgCAcgugCCGUgcgGCCa -3' miRNA: 3'- gCACG-UGUGCaaGUgGUa---GGCGa--CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 128761 | 0.66 | 0.941619 |
Target: 5'- gCG-GCGCuuGc-CGCCuUCUGCUGCCg -3' miRNA: 3'- -GCaCGUGugCaaGUGGuAGGCGACGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 97908 | 0.66 | 0.941619 |
Target: 5'- --aGCGCGcCGUcCGCCgggucGUCCGCgccGCCg -3' miRNA: 3'- gcaCGUGU-GCAaGUGG-----UAGGCGa--CGG- -5' |
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6598 | 3' | -54.4 | NC_001847.1 | + | 67065 | 0.66 | 0.941619 |
Target: 5'- --cGCGCcgcgGCGUUCGCCccgCCGCaggcgcGCCg -3' miRNA: 3'- gcaCGUG----UGCAAGUGGua-GGCGa-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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