miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 5' -57.7 NC_001847.1 + 64589 1.08 0.001692
Target:  5'- cGGGGCAUUGAGCGCGUGGCCCACAUUg -3'
miRNA:   3'- -CCCCGUAACUCGCGCACCGGGUGUAA- -5'
6598 5' -57.7 NC_001847.1 + 34073 0.8 0.144674
Target:  5'- aGGGGCAcgcgGAGCGCGUGGCggCCGCcgUg -3'
miRNA:   3'- -CCCCGUaa--CUCGCGCACCG--GGUGuaA- -5'
6598 5' -57.7 NC_001847.1 + 65736 0.78 0.186966
Target:  5'- cGGGGCGgcgcucgaGAGCGUgGUGGCCCGCGg- -3'
miRNA:   3'- -CCCCGUaa------CUCGCG-CACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 32095 0.74 0.35728
Target:  5'- cGGGCGUcgGGGCGCGaGGCCCGgGc- -3'
miRNA:   3'- cCCCGUAa-CUCGCGCaCCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 134908 0.74 0.35728
Target:  5'- cGGGCGUcgGGGCGCGaGGCCCGgGc- -3'
miRNA:   3'- cCCCGUAa-CUCGCGCaCCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 2170 0.73 0.390208
Target:  5'- cGGGGaa--GAGCGgGUGGUCCGCGa- -3'
miRNA:   3'- -CCCCguaaCUCGCgCACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 104983 0.73 0.390208
Target:  5'- cGGGGaa--GAGCGgGUGGUCCGCGa- -3'
miRNA:   3'- -CCCCguaaCUCGCgCACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 45708 0.72 0.425059
Target:  5'- cGGGCc--GAGCGCGUGGUaCACGUg -3'
miRNA:   3'- cCCCGuaaCUCGCGCACCGgGUGUAa -5'
6598 5' -57.7 NC_001847.1 + 106798 0.72 0.434057
Target:  5'- gGGGGCcc-GGGCGCGcGGCcCCGCGg- -3'
miRNA:   3'- -CCCCGuaaCUCGCGCaCCG-GGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 3986 0.72 0.452381
Target:  5'- gGGGGCc--GGGCGCGcGGCcCCGCGg- -3'
miRNA:   3'- -CCCCGuaaCUCGCGCaCCG-GGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 111314 0.71 0.480633
Target:  5'- cGGGGCcgUGcGCGCGcUGGaCCGCGa- -3'
miRNA:   3'- -CCCCGuaACuCGCGC-ACCgGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 130941 0.71 0.490241
Target:  5'- aGGGCuUUGGcugccuGCGCGcGGCCCACGg- -3'
miRNA:   3'- cCCCGuAACU------CGCGCaCCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 116135 0.71 0.490241
Target:  5'- cGGGCGcugGGGCGCGcGGCCCGa--- -3'
miRNA:   3'- cCCCGUaa-CUCGCGCaCCGGGUguaa -5'
6598 5' -57.7 NC_001847.1 + 69680 0.71 0.499938
Target:  5'- aGGcaGCGUUGGGCGCGgGGCCgGCGc- -3'
miRNA:   3'- cCC--CGUAACUCGCGCaCCGGgUGUaa -5'
6598 5' -57.7 NC_001847.1 + 134517 0.71 0.519578
Target:  5'- gGGGGCGggggGAgGCGCG-GGCCgCGCGc- -3'
miRNA:   3'- -CCCCGUaa--CU-CGCGCaCCGG-GUGUaa -5'
6598 5' -57.7 NC_001847.1 + 39626 0.71 0.519578
Target:  5'- aGGGGCAagccuGGCGCGcccgccaGGCCCACGg- -3'
miRNA:   3'- -CCCCGUaac--UCGCGCa------CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 31704 0.71 0.519578
Target:  5'- gGGGGCGggggGAgGCGCG-GGCCgCGCGc- -3'
miRNA:   3'- -CCCCGUaa--CU-CGCGCaCCGG-GUGUaa -5'
6598 5' -57.7 NC_001847.1 + 116443 0.7 0.529512
Target:  5'- aGGGCggUGGGCGC-UGGCgCACGc- -3'
miRNA:   3'- cCCCGuaACUCGCGcACCGgGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 104888 0.7 0.529512
Target:  5'- cGGuGGCGgcGAGCGCcccgcggGGCCCGCGc- -3'
miRNA:   3'- -CC-CCGUaaCUCGCGca-----CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 2075 0.7 0.529512
Target:  5'- cGGuGGCGgcGAGCGCcccgcggGGCCCGCGc- -3'
miRNA:   3'- -CC-CCGUaaCUCGCGca-----CCGGGUGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.