miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6598 5' -57.7 NC_001847.1 + 56 0.68 0.64196
Target:  5'- gGGGGCGgaaauuucGGCGCGgcgGGCCCGgGc- -3'
miRNA:   3'- -CCCCGUaac-----UCGCGCa--CCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 975 0.67 0.743442
Target:  5'- cGGGCGUcuauGCGCc-GGCCCGCAg- -3'
miRNA:   3'- cCCCGUAacu-CGCGcaCCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 1437 0.68 0.662603
Target:  5'- cGGGCcca-GGCGCGUGGCCaccguguagcgCACGUUg -3'
miRNA:   3'- cCCCGuaacUCGCGCACCGG-----------GUGUAA- -5'
6598 5' -57.7 NC_001847.1 + 2075 0.7 0.529512
Target:  5'- cGGuGGCGgcGAGCGCcccgcggGGCCCGCGc- -3'
miRNA:   3'- -CC-CCGUaaCUCGCGca-----CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 2170 0.73 0.390208
Target:  5'- cGGGGaa--GAGCGgGUGGUCCGCGa- -3'
miRNA:   3'- -CCCCguaaCUCGCgCACCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 3944 0.68 0.64196
Target:  5'- cGGGCGgcGAGCGCGa--CCCACAg- -3'
miRNA:   3'- cCCCGUaaCUCGCGCaccGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 3986 0.72 0.452381
Target:  5'- gGGGGCc--GGGCGCGcGGCcCCGCGg- -3'
miRNA:   3'- -CCCCGuaaCUCGCGCaCCG-GGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 4873 0.69 0.600645
Target:  5'- gGGGGCGgcGGGCaGCGgcagGGCCCccGCGc- -3'
miRNA:   3'- -CCCCGUaaCUCG-CGCa---CCGGG--UGUaa -5'
6598 5' -57.7 NC_001847.1 + 4977 0.67 0.743442
Target:  5'- gGGGGCAgcugGGGUGCGgcGGCCgCGgCAa- -3'
miRNA:   3'- -CCCCGUaa--CUCGCGCa-CCGG-GU-GUaa -5'
6598 5' -57.7 NC_001847.1 + 5618 0.67 0.743442
Target:  5'- cGGGCG-UGGGCGcCGcGGuCCCGCGc- -3'
miRNA:   3'- cCCCGUaACUCGC-GCaCC-GGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 6849 0.66 0.790126
Target:  5'- uGGGGgGggGGGCgGCGcuugcuuUGGCCCGCc-- -3'
miRNA:   3'- -CCCCgUaaCUCG-CGC-------ACCGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 7428 0.7 0.580099
Target:  5'- gGGGGgGggGGGgGCGUacuugcagcGGCCCGCAc- -3'
miRNA:   3'- -CCCCgUaaCUCgCGCA---------CCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 12954 0.69 0.621286
Target:  5'- uGGGGCGgcGGGCcggGgGUGGCCCGg--- -3'
miRNA:   3'- -CCCCGUaaCUCG---CgCACCGGGUguaa -5'
6598 5' -57.7 NC_001847.1 + 14131 0.7 0.549581
Target:  5'- cGGGCGaUGGGCG-G-GGCCCGCGc- -3'
miRNA:   3'- cCCCGUaACUCGCgCaCCGGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 18008 0.67 0.7532
Target:  5'- cGGGGCuGUUGGGCGUGgggGGCgUUGCGc- -3'
miRNA:   3'- -CCCCG-UAACUCGCGCa--CCG-GGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 19194 0.67 0.743442
Target:  5'- gGGGGCg--GGGUcUGUGGCCCAgAc- -3'
miRNA:   3'- -CCCCGuaaCUCGcGCACCGGGUgUaa -5'
6598 5' -57.7 NC_001847.1 + 22112 0.69 0.631623
Target:  5'- gGGGGCGacagcGGGCGCGcccugGGCCCgGCGg- -3'
miRNA:   3'- -CCCCGUaa---CUCGCGCa----CCGGG-UGUaa -5'
6598 5' -57.7 NC_001847.1 + 22204 0.66 0.800165
Target:  5'- uGGGCcgUGcugaAGCGCGUG-CCCAUc-- -3'
miRNA:   3'- cCCCGuaAC----UCGCGCACcGGGUGuaa -5'
6598 5' -57.7 NC_001847.1 + 22383 0.66 0.781781
Target:  5'- cGGGGCAgaaGGCGCccGGgCCGCGg- -3'
miRNA:   3'- -CCCCGUaacUCGCGcaCCgGGUGUaa -5'
6598 5' -57.7 NC_001847.1 + 22488 0.66 0.791046
Target:  5'- uGGGGCAagGcuGGC-CGUGGCUCAUg-- -3'
miRNA:   3'- -CCCCGUaaC--UCGcGCACCGGGUGuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.