miRNA display CGI


Results 41 - 60 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 69054 0.66 0.483496
Target:  5'- aCGGgGGCGAcguGGacuuucuaaCGCGCucGCCGCGuCu -3'
miRNA:   3'- -GCCgCCGCUu--CCg--------GCGCG--CGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 44443 0.66 0.483496
Target:  5'- aCGGgGGCGc-GGCgCGCGgcaCGCgCGCGAg -3'
miRNA:   3'- -GCCgCCGCuuCCG-GCGC---GCG-GCGCUg -5'
6617 5' -65.4 NC_001847.1 + 104844 0.66 0.483496
Target:  5'- uCGGgGuccGCGAucugcgacauccAGGCCaCGCGCCGCcGCa -3'
miRNA:   3'- -GCCgC---CGCU------------UCCGGcGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 73743 0.66 0.483496
Target:  5'- cCGGCuGGagGAGGGCCacuuuGCGCaguaccugauCCGCGACg -3'
miRNA:   3'- -GCCG-CCg-CUUCCGG-----CGCGc---------GGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 84366 0.66 0.483496
Target:  5'- aGGUGuauUGAGcGGCCGCG-GaCCGCGGCa -3'
miRNA:   3'- gCCGCc--GCUU-CCGGCGCgC-GGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 71572 0.66 0.483496
Target:  5'- aCGGCaGCGAGcGCaccuuuuGCGCGCuggCGCGGCu -3'
miRNA:   3'- -GCCGcCGCUUcCGg------CGCGCG---GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 59616 0.66 0.483496
Target:  5'- uCGcGCGGUGc--GCCGUGCGCUGCu-- -3'
miRNA:   3'- -GC-CGCCGCuucCGGCGCGCGGCGcug -5'
6617 5' -65.4 NC_001847.1 + 38074 0.66 0.483496
Target:  5'- gCGcGCGGCGGccGCCGCG-GUCGgGGa -3'
miRNA:   3'- -GC-CGCCGCUucCGGCGCgCGGCgCUg -5'
6617 5' -65.4 NC_001847.1 + 2031 0.66 0.483496
Target:  5'- uCGGgGuccGCGAucugcgacauccAGGCCaCGCGCCGCcGCa -3'
miRNA:   3'- -GCCgC---CGCU------------UCCGGcGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 1438 0.66 0.483496
Target:  5'- gGGCccaGGCGcguGGCCaccguguaGCGCacguugccGCCGCGGCa -3'
miRNA:   3'- gCCG---CCGCuu-CCGG--------CGCG--------CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 131676 0.66 0.483496
Target:  5'- uCGGC-GCGccGGCgCGCGCuuGCUGuCGACu -3'
miRNA:   3'- -GCCGcCGCuuCCG-GCGCG--CGGC-GCUG- -5'
6617 5' -65.4 NC_001847.1 + 101158 0.66 0.483496
Target:  5'- aGGCugGGCccagcccGGCCaGCGCGCC-CGGCg -3'
miRNA:   3'- gCCG--CCGcuu----CCGG-CGCGCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 51025 0.66 0.483496
Target:  5'- gCGGCGGCaucGGCUGCacgaCGCCGCc-- -3'
miRNA:   3'- -GCCGCCGcuuCCGGCGc---GCGGCGcug -5'
6617 5' -65.4 NC_001847.1 + 132573 0.66 0.483496
Target:  5'- nCGGCcGCGcAGGcGCC-CGCGCCGaaGACa -3'
miRNA:   3'- -GCCGcCGC-UUC-CGGcGCGCGGCg-CUG- -5'
6617 5' -65.4 NC_001847.1 + 95542 0.66 0.483496
Target:  5'- uGG-GGCuGGGGCCGCGCcgcagcagcGCUGgGGCc -3'
miRNA:   3'- gCCgCCGcUUCCGGCGCG---------CGGCgCUG- -5'
6617 5' -65.4 NC_001847.1 + 104251 0.66 0.483496
Target:  5'- gGGCccaGGCGcguGGCCaccguguaGCGCacguugccGCCGCGGCa -3'
miRNA:   3'- gCCG---CCGCuu-CCGG--------CGCG--------CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 90743 0.66 0.483496
Target:  5'- -cGCGGCGcguGGCCGgGCcCCGgGAg -3'
miRNA:   3'- gcCGCCGCuu-CCGGCgCGcGGCgCUg -5'
6617 5' -65.4 NC_001847.1 + 57052 0.66 0.4826
Target:  5'- aGGCGGauCGAGcccGGCCGCcgcccggacuccuGCGCCGUcguGGCc -3'
miRNA:   3'- gCCGCC--GCUU---CCGGCG-------------CGCGGCG---CUG- -5'
6617 5' -65.4 NC_001847.1 + 15111 0.66 0.4826
Target:  5'- gGGCGGuCGGgggagggccuAGGCCgcucacccgggcaGCGCGCUGUaguuGACg -3'
miRNA:   3'- gCCGCC-GCU----------UCCGG-------------CGCGCGGCG----CUG- -5'
6617 5' -65.4 NC_001847.1 + 88102 0.66 0.48081
Target:  5'- gCGGUGGCGcggcuGGCCggaaucacggugucGCGCGCCauuuuUGACg -3'
miRNA:   3'- -GCCGCCGCuu---CCGG--------------CGCGCGGc----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.