miRNA display CGI


Results 21 - 40 of 1257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 34357 0.66 0.492501
Target:  5'- cCGGCcgGGagaGAAGGCCaGCgaGCGCCauggcgcgggGCGACc -3'
miRNA:   3'- -GCCG--CCg--CUUCCGG-CG--CGCGG----------CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 12673 0.66 0.492501
Target:  5'- aCGGCGacGCGAAGcugcaCUGCGCGUCgGCGGg -3'
miRNA:   3'- -GCCGC--CGCUUCc----GGCGCGCGG-CGCUg -5'
6617 5' -65.4 NC_001847.1 + 11975 0.66 0.492501
Target:  5'- aGGCgugccguuGGCGggGGCuCGCGCaaacCCGCu-- -3'
miRNA:   3'- gCCG--------CCGCuuCCG-GCGCGc---GGCGcug -5'
6617 5' -65.4 NC_001847.1 + 42390 0.66 0.492501
Target:  5'- gCGGCugcacGGCGAGGuccuggccuGCCaCGCGCUGCG-Cg -3'
miRNA:   3'- -GCCG-----CCGCUUC---------CGGcGCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 98892 0.66 0.492501
Target:  5'- gGGCGGCccAGGCCGgGaGCU-CGGCa -3'
miRNA:   3'- gCCGCCGcuUCCGGCgCgCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 77830 0.66 0.492501
Target:  5'- uGGCGGUGcAGGGCucacgagcuCGCG-GCC-CGGCa -3'
miRNA:   3'- gCCGCCGC-UUCCG---------GCGCgCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 97551 0.66 0.492501
Target:  5'- gGGcCGGCccccGGCCGcCGCaGCCGCaGCg -3'
miRNA:   3'- gCC-GCCGcuu-CCGGC-GCG-CGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 55741 0.66 0.492501
Target:  5'- aCGGUGGUcc-GGCuCGCGC-CCGCG-Cg -3'
miRNA:   3'- -GCCGCCGcuuCCG-GCGCGcGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 106293 0.66 0.492501
Target:  5'- cCGGCGucgcGCGcgcGGCCGCGCguucuagcaGCCGCa-- -3'
miRNA:   3'- -GCCGC----CGCuu-CCGGCGCG---------CGGCGcug -5'
6617 5' -65.4 NC_001847.1 + 121969 0.66 0.491597
Target:  5'- cCGGUGGCGugaacugcguGGCUGCcaGCagcccaaccgccgGCCGCGGCn -3'
miRNA:   3'- -GCCGCCGCuu--------CCGGCG--CG-------------CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 62087 0.66 0.491597
Target:  5'- gGGCGG-Guc-GCCGCGCGUCauguacagguucuGCGGCg -3'
miRNA:   3'- gCCGCCgCuucCGGCGCGCGG-------------CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 122686 0.66 0.491597
Target:  5'- -aGCcGCGGAGGCuccgccgCGCGCGCUGUGcCg -3'
miRNA:   3'- gcCGcCGCUUCCG-------GCGCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 58124 0.66 0.487088
Target:  5'- gCGGCGGaUGAGcgccaggaccuccuGGUCGCuguccucgaggcggGCGaCCGCGGCg -3'
miRNA:   3'- -GCCGCC-GCUU--------------CCGGCG--------------CGC-GGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 125279 0.66 0.487088
Target:  5'- aGGCGGC-AGGaGCCGUcgcagguggggcaagGCugGCCGUGGCu -3'
miRNA:   3'- gCCGCCGcUUC-CGGCG---------------CG--CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 50776 0.66 0.487088
Target:  5'- -cGCGGUccgcGGCCGCucaauacaccucgcgGCGCUGCGGCc -3'
miRNA:   3'- gcCGCCGcuu-CCGGCG---------------CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 22466 0.66 0.487088
Target:  5'- aGGCGGC-AGGaGCCGUcgcagguggggcaagGCugGCCGUGGCu -3'
miRNA:   3'- gCCGCCGcUUC-CGGCG---------------CG--CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 51025 0.66 0.483496
Target:  5'- gCGGCGGCaucGGCUGCacgaCGCCGCc-- -3'
miRNA:   3'- -GCCGCCGcuuCCGGCGc---GCGGCGcug -5'
6617 5' -65.4 NC_001847.1 + 101158 0.66 0.483496
Target:  5'- aGGCugGGCccagcccGGCCaGCGCGCC-CGGCg -3'
miRNA:   3'- gCCG--CCGcuu----CCGG-CGCGCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 132573 0.66 0.483496
Target:  5'- nCGGCcGCGcAGGcGCC-CGCGCCGaaGACa -3'
miRNA:   3'- -GCCGcCGC-UUC-CGGcGCGCGGCg-CUG- -5'
6617 5' -65.4 NC_001847.1 + 104251 0.66 0.483496
Target:  5'- gGGCccaGGCGcguGGCCaccguguaGCGCacguugccGCCGCGGCa -3'
miRNA:   3'- gCCG---CCGCuu-CCGG--------CGCG--------CGGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.