miRNA display CGI


Results 21 - 40 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 1923 0.74 0.144226
Target:  5'- aGGUGGCGAGGcuuaGCCgGCGCGCgGCG-Ca -3'
miRNA:   3'- gCCGCCGCUUC----CGG-CGCGCGgCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 1934 0.72 0.201477
Target:  5'- gCGGCGGCcacucGGGCCGCcgGCGCUcguccucgccggGCGGCg -3'
miRNA:   3'- -GCCGCCGcu---UCCGGCG--CGCGG------------CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2031 0.66 0.483496
Target:  5'- uCGGgGuccGCGAucugcgacauccAGGCCaCGCGCCGCcGCa -3'
miRNA:   3'- -GCCgC---CGCU------------UCCGGcGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 2078 0.82 0.041006
Target:  5'- uGGCGGCGAgcgccccgcgGGGCC-CGCGCgGCGGCg -3'
miRNA:   3'- gCCGCCGCU----------UCCGGcGCGCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2169 0.68 0.382464
Target:  5'- uCGGgGaagaGCGGGuGGuCCGCgagccGCGCCGCGACc -3'
miRNA:   3'- -GCCgC----CGCUU-CC-GGCG-----CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2211 0.87 0.018373
Target:  5'- gGGCGGCaguAGGCCGCcaGCGCCGCGGCg -3'
miRNA:   3'- gCCGCCGcu-UCCGGCG--CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2219 0.68 0.374697
Target:  5'- -uGCGGUaGAGGUCGCG-GCCGUGGa -3'
miRNA:   3'- gcCGCCGcUUCCGGCGCgCGGCGCUg -5'
6617 5' -65.4 NC_001847.1 + 2292 0.72 0.196805
Target:  5'- uCGGCGGCG-GGGCCGC-CGg-GCGGCa -3'
miRNA:   3'- -GCCGCCGCuUCCGGCGcGCggCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2341 0.68 0.344712
Target:  5'- gCGGCGGCucccGCCGCGCcgGCC-CGGCc -3'
miRNA:   3'- -GCCGCCGcuucCGGCGCG--CGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2373 0.72 0.192227
Target:  5'- uCGGCGGCGgcGGCuuuuCGCcgGCGCCuCGGCc -3'
miRNA:   3'- -GCCGCCGCuuCCG----GCG--CGCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2392 0.71 0.226305
Target:  5'- aCGGCGGUGAcgcgcucGGCCGUggcucgcuGCGCCGCuucGGCc -3'
miRNA:   3'- -GCCGCCGCUu------CCGGCG--------CGCGGCG---CUG- -5'
6617 5' -65.4 NC_001847.1 + 2436 0.7 0.283712
Target:  5'- gCGGCGGcCGGcaGGGCCGC-CGCCuCGcCg -3'
miRNA:   3'- -GCCGCC-GCU--UCCGGCGcGCGGcGCuG- -5'
6617 5' -65.4 NC_001847.1 + 2474 0.67 0.422869
Target:  5'- gGGCGGCGgcGcccCCGC-CGCCGUgugaaGACg -3'
miRNA:   3'- gCCGCCGCuuCc--GGCGcGCGGCG-----CUG- -5'
6617 5' -65.4 NC_001847.1 + 2539 0.73 0.170718
Target:  5'- cCGGCGGCGcucccGCCGcCGgGCCGgGGCg -3'
miRNA:   3'- -GCCGCCGCuuc--CGGC-GCgCGGCgCUG- -5'
6617 5' -65.4 NC_001847.1 + 2571 0.68 0.33749
Target:  5'- uCGGC-GCGGGcGCCuGCGCggccGCCGCGGCc -3'
miRNA:   3'- -GCCGcCGCUUcCGG-CGCG----CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2632 0.67 0.431253
Target:  5'- uCGGCGG-GAccGCCGuCGcCGCUuGCGGCg -3'
miRNA:   3'- -GCCGCCgCUucCGGC-GC-GCGG-CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2787 0.74 0.139399
Target:  5'- cCGGCGGCcuccAGGGCCGCGagcgcggccgccaGCCGCGcCg -3'
miRNA:   3'- -GCCGCCGc---UUCCGGCGCg------------CGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 2872 0.75 0.134064
Target:  5'- aGGCcgacGCGcGGGCCGcCGCGCCGCG-Cg -3'
miRNA:   3'- gCCGc---CGCuUCCGGC-GCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 2958 0.69 0.303046
Target:  5'- gCGGCGGCcgccucGGCgCGCaGCGCCGCcggGGCc -3'
miRNA:   3'- -GCCGCCGcuu---CCG-GCG-CGCGGCG---CUG- -5'
6617 5' -65.4 NC_001847.1 + 3101 0.77 0.083669
Target:  5'- gCGGcCGGC--AGGCCGCGgccCGCCGCGGCc -3'
miRNA:   3'- -GCC-GCCGcuUCCGGCGC---GCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.