miRNA display CGI


Results 1 - 20 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 64 0.67 0.431253
Target:  5'- gCGGCgGGCGggGGCggggugggggaUGgGCGCggagCGCGAg -3'
miRNA:   3'- -GCCG-CCGCuuCCG-----------GCgCGCG----GCGCUg -5'
6617 5' -65.4 NC_001847.1 + 222 0.69 0.296491
Target:  5'- cCGGgGGCccGAgcccGGGCCuCGCGCCcCGACg -3'
miRNA:   3'- -GCCgCCG--CU----UCCGGcGCGCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 355 0.67 0.398316
Target:  5'- gGGCuucGCGccccGGGGCCcgccccGCGCGCCGCG-Cg -3'
miRNA:   3'- gCCGc--CGC----UUCCGG------CGCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 426 0.71 0.236941
Target:  5'- gGGCgGGCGGGcGGCgGCG-GCgGCGGCa -3'
miRNA:   3'- gCCG-CCGCUU-CCGgCGCgCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 457 0.8 0.055774
Target:  5'- gCGGCGGCGgcGGCgGCG-GCgGCGGCa -3'
miRNA:   3'- -GCCGCCGCuuCCGgCGCgCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 490 0.82 0.040901
Target:  5'- gCGGCGGCGGGgcGGCCGCGCGCCaaccccccuguccGCGGa -3'
miRNA:   3'- -GCCGCCGCUU--CCGGCGCGCGG-------------CGCUg -5'
6617 5' -65.4 NC_001847.1 + 557 0.74 0.140762
Target:  5'- uGGCGGCGGAcGCCa-GCGCCGCGuCu -3'
miRNA:   3'- gCCGCCGCUUcCGGcgCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 578 0.74 0.158869
Target:  5'- uGGCGGCGAcgAGGCCGUcuuuguguccuGC-CCGaCGACg -3'
miRNA:   3'- gCCGCCGCU--UCCGGCG-----------CGcGGC-GCUG- -5'
6617 5' -65.4 NC_001847.1 + 779 0.72 0.206246
Target:  5'- cCGGCGGCGccGGCCuCGuCGUCGUccGACg -3'
miRNA:   3'- -GCCGCCGCuuCCGGcGC-GCGGCG--CUG- -5'
6617 5' -65.4 NC_001847.1 + 875 0.8 0.057216
Target:  5'- aCGcGCGGCGgcGGCC-CGCGCCGgGGCc -3'
miRNA:   3'- -GC-CGCCGCuuCCGGcGCGCGGCgCUG- -5'
6617 5' -65.4 NC_001847.1 + 905 0.66 0.456974
Target:  5'- -cGCGGcCGccGGCCGCcgcccgccgGCGCCGgGAa -3'
miRNA:   3'- gcCGCC-GCuuCCGGCG---------CGCGGCgCUg -5'
6617 5' -65.4 NC_001847.1 + 998 0.82 0.041967
Target:  5'- gCGGCGGCGGcacgcgcuccaccAGGCCGC-CGCCcGCGGCg -3'
miRNA:   3'- -GCCGCCGCU-------------UCCGGCGcGCGG-CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 1064 0.69 0.296491
Target:  5'- gCGGCGGCGccGGGCUGUuCGCUGCu-- -3'
miRNA:   3'- -GCCGCCGCu-UCCGGCGcGCGGCGcug -5'
6617 5' -65.4 NC_001847.1 + 1095 0.75 0.115693
Target:  5'- gGGCGccGCGGccgcGGGCgGCGcCGCCGCGGCc -3'
miRNA:   3'- gCCGC--CGCU----UCCGgCGC-GCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 1163 0.75 0.115693
Target:  5'- cCGGCaGCGc-GGCCGCGCagaaggccaccGCCGCGGCc -3'
miRNA:   3'- -GCCGcCGCuuCCGGCGCG-----------CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 1438 0.66 0.483496
Target:  5'- gGGCccaGGCGcguGGCCaccguguaGCGCacguugccGCCGCGGCa -3'
miRNA:   3'- gCCG---CCGCuu-CCGG--------CGCG--------CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 1493 0.75 0.115693
Target:  5'- gCGGCGGCGccucgggguAGaGCCGCGCGUagGCGGCc -3'
miRNA:   3'- -GCCGCCGCu--------UC-CGGCGCGCGg-CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 1531 0.75 0.12766
Target:  5'- uCGGCGcgcGCGAaggcgcccGGGCCGaagaCGCGCCGCGAg -3'
miRNA:   3'- -GCCGC---CGCU--------UCCGGC----GCGCGGCGCUg -5'
6617 5' -65.4 NC_001847.1 + 1579 0.7 0.273805
Target:  5'- aCGGCGcGCGccagcgcgccgcucGGGCCaGCgcgcggcgcacuGCGCCGCGGCa -3'
miRNA:   3'- -GCCGC-CGCu-------------UCCGG-CG------------CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 1705 0.72 0.196805
Target:  5'- aCGGCGuCGAgcacgaucAGccGCCGcCGCGCCGCGGCc -3'
miRNA:   3'- -GCCGCcGCU--------UC--CGGC-GCGCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.