miRNA display CGI


Results 1 - 20 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 80812 1.08 0.000433
Target:  5'- aCGGCGGCGAAGGCCGCGCGCCGCGACu -3'
miRNA:   3'- -GCCGCCGCUUCCGGCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 59346 0.9 0.009569
Target:  5'- gCGGCGGCG-AGGUCGCGCGCCGCGcCg -3'
miRNA:   3'- -GCCGCCGCuUCCGGCGCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 30399 0.88 0.014532
Target:  5'- cCGGCGGCccGAGuGGCCGcCGCGCCGCGGCg -3'
miRNA:   3'- -GCCGCCG--CUU-CCGGC-GCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 133212 0.88 0.014532
Target:  5'- cCGGCGGCccGAGuGGCCGcCGCGCCGCGGCg -3'
miRNA:   3'- -GCCGCCG--CUU-CCGGC-GCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 2211 0.87 0.018373
Target:  5'- gGGCGGCaguAGGCCGCcaGCGCCGCGGCg -3'
miRNA:   3'- gCCGCCGcu-UCCGGCG--CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 105024 0.87 0.018373
Target:  5'- gGGCGGCaguAGGCCGCcaGCGCCGCGGCg -3'
miRNA:   3'- gCCGCCGcu-UCCGGCG--CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 73185 0.86 0.018808
Target:  5'- gCGGCGGCGGagucggcccgcgcGGGCCGCGcCGCCGCuGACg -3'
miRNA:   3'- -GCCGCCGCU-------------UCCGGCGC-GCGGCG-CUG- -5'
6617 5' -65.4 NC_001847.1 + 69443 0.86 0.018857
Target:  5'- gCGGUGGCGGAcGGCgGCGCGCgCGCGGCg -3'
miRNA:   3'- -GCCGCCGCUU-CCGgCGCGCG-GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 98787 0.85 0.023217
Target:  5'- gCGGCGGCGccGcGUgGCGCGCCGCGGCg -3'
miRNA:   3'- -GCCGCCGCuuC-CGgCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 94370 0.85 0.025096
Target:  5'- gCGGCGGCGucuGCCGCGCGCaCGUGACg -3'
miRNA:   3'- -GCCGCCGCuucCGGCGCGCG-GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 134515 0.84 0.027838
Target:  5'- uCGGgGGCGGggggaggcgcGGGCCGCGCGCCGCuGCg -3'
miRNA:   3'- -GCCgCCGCU----------UCCGGCGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 131926 0.84 0.027838
Target:  5'- gCGGCGGCGcgGAGGCaCGUGCGCCgGCGAUg -3'
miRNA:   3'- -GCCGCCGC--UUCCG-GCGCGCGG-CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 31702 0.84 0.027838
Target:  5'- uCGGgGGCGGggggaggcgcGGGCCGCGCGCCGCuGCg -3'
miRNA:   3'- -GCCgCCGCU----------UCCGGCGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 37573 0.84 0.027838
Target:  5'- gCGGCGGCGcuGGCCGCuGCgGCUGCGGCg -3'
miRNA:   3'- -GCCGCCGCuuCCGGCG-CG-CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 29298 0.83 0.030875
Target:  5'- uGGCGGCaGAGGCCGCG-GCCGCgGACa -3'
miRNA:   3'- gCCGCCGcUUCCGGCGCgCGGCG-CUG- -5'
6617 5' -65.4 NC_001847.1 + 51622 0.83 0.03243
Target:  5'- gGGCGGCgcacggaccgcagGAAGGCaCGCaGCGCCGCGGCg -3'
miRNA:   3'- gCCGCCG-------------CUUCCG-GCG-CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 34111 0.83 0.034237
Target:  5'- gCGGCGGCGGAGccugcggcgccuGCCGCGguggcCGCCGCGGCg -3'
miRNA:   3'- -GCCGCCGCUUC------------CGGCGC-----GCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 27495 0.82 0.036992
Target:  5'- uCGGCGGCaGAGgccucGGCCGC-CGCCGCGGCg -3'
miRNA:   3'- -GCCGCCG-CUU-----CCGGCGcGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 100646 0.82 0.036992
Target:  5'- -uGCGGCGccAGGGCCGCGCuGCUGCGGCg -3'
miRNA:   3'- gcCGCCGC--UUCCGGCGCG-CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 5173 0.82 0.038849
Target:  5'- uCGGCGGCGAuuucggggaacAGcGCCgcgagcgcggcaaGCGCGCCGCGACg -3'
miRNA:   3'- -GCCGCCGCU-----------UC-CGG-------------CGCGCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.